CuGenDBv2

Gene ID	HG10022650
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Sm-like protein LSM2
Genome location	Chr05:26654771..26655825
RNA-Seq Expression	HG10022650
Synteny	HG10022650
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0006414 - translational elongation (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0071472 - cellular response to salt stress (biological process) GO:0000932 - P-body (cellular component) GO:0005688 - U6 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0120115 - Lsm2-8 complex (cellular component) GO:1990726 - Lsm1-7-Pat1 complex (cellular component) GO:0003746 - translation elongation factor activity (molecular function) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR010920 - LSM domain superfamily IPR016654 - U6 snRNA-associated Sm-like protein LSm2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA3471103.1 sm-like protein LSM2 [Gossypium australe]

6.7e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

THG15486.1 hypothetical protein TEA_020719 [Camellia sinensis var. sinensis]

6.7e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_010038129.1 sm-like protein LSM2 [Eucalyptus grandis]

6.7e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_039048231.1 sm-like protein LSM2 [Hibiscus syriacus]

6.7e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_039061884.1 sm-like protein LSM2 [Hibiscus syriacus]

6.7e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

TrEMBL top hits

e value

%identity

Alignment

A0A0B0N830 Sm-like protein LSM2

3.2e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5D2BJZ3 Sm-like protein LSM2

3.2e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5D2TT01 Sm-like protein LSM2

3.2e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5J5UQ23 Sm-like protein LSM2

3.2e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A6J1E038 Sm-like protein LSM2

3.2e-14

100

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

SwissProt top hits

e value

%identity

Alignment

O35900 U6 snRNA-associated Sm-like protein LSm2

6.1e-10

78.38

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

P38203 U6 snRNA-associated Sm-like protein LSm2

2.0e-05

70.59

Show/hide

Query:  SVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
        SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  SVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE

Q1H595 Sm-like protein LSM2

8.2e-15

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm2

1.5e-08

68.42

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR
        M+SV+NCFIRGSVVRYV LP + VD+E L D +R EAR
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR

Q9Y333 U6 snRNA-associated Sm-like protein LSm2

6.1e-10

78.38

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Arabidopsis top hits

e value

%identity

Alignment

AT1G03330.1 Small nuclear ribonucleoprotein family protein

5.8e-16

Show/hide

Query:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGACATCGAACTGCTGCATGATGCCACGAGACGCGAGGC
TCGGGGTGGCTAA

mRNA sequence

Show/hide mRNA sequence

ATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGACATCGAACTGCTGCATGATGCCACGAGACGCGAGGC
TCGGGGTGGCTAA

Protein sequence

Show/hide protein sequence

MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

HG10022650 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome