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HG10022713 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022713
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionembryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2
Genome locationChr05:27451642..27452140
RNA-Seq ExpressionHG10022713
SyntenyHG10022713
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0018142 - protein-DNA covalent cross-linking (biological process)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003738 - SOS response associated peptidase (SRAP)
IPR036590 - SOS response associated peptidase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458106.1 PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2 [Cucumis melo]2.1e-3994.05Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDITRACHRTGG VR+LNMDRF PLFNASPGSDLPVVRRDDES  GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

XP_011659220.1 uncharacterized protein LOC101206083 isoform X1 [Cucumis sativus]2.1e-3994.05Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDITRACHRTGG VR+LNMDRF PLFNASPGSDLPVVRRDDES  GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

XP_011659221.1 uncharacterized protein LOC101206083 isoform X2 [Cucumis sativus]2.1e-3994.05Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDITRACHRTGG VR+LNMDRF PLFNASPGSDLPVVRRDDES  GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

XP_038896829.1 abasic site processing protein YoqW isoform X1 [Benincasa hispida]1.1e-4096.43Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDI RACHRTGGRVRTLNMDRF PLFNASPGSDLPVVRRDDESG GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

XP_038896830.1 abasic site processing protein HMCES isoform X2 [Benincasa hispida]1.1e-4096.43Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDI RACHRTGGRVRTLNMDRF PLFNASPGSDLPVVRRDDESG GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

TrEMBL top hitse value%identityAlignment
A0A0A0K6X8 Uncharacterized protein1.0e-3994.05Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDITRACHRTGG VR+LNMDRF PLFNASPGSDLPVVRRDDES  GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

A0A1S3C6L7 putative SOS response-associated peptidase YobE isoform X11.0e-3994.05Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDITRACHRTGG VR+LNMDRF PLFNASPGSDLPVVRRDDES  GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

A0A1S3C774 embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X21.0e-3994.05Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLRADDITRACHRTGG VR+LNMDRF PLFNASPGSDLPVVRRDDES  GGVVLQCMKWGLIPSFTEKFEKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

A0A6J1H9B1 LOW QUALITY PROTEIN: uncharacterized protein LOC1114612581.2e-3789.29Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLR DDI+RACHRTGG +R+LNMDRF PLFNASPGSDLPVVRRDDES GGGVVLQCMKWGLIPSFT K EKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

A0A6J1KPK2 LOW QUALITY PROTEIN: uncharacterized protein LOC1114975571.2e-3789.29Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGRARCTLR DDI+RACHRTGG +R+LNMDRF PLFNASPGSDLPVVRRDDES GGGVVLQCMKWGLIPSFT K EKPNYFKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

SwissProt top hitse value%identityAlignment
Q5XIJ1 Abasic site processing protein HMCES2.3e-0434.57Show/hide
Query:  MCGRARCTLRADDITRAC---HRTGGR--VRTLNMDRFHPLFNASPGSDLPV----VRRDDESGGGGVVLQCMKWGLIPSF
        MCGR  C L  D +TRAC    R G R   +  + D++ P +N SP S  PV    +  + ++     ++  M+WGL+PS+
Subjt:  MCGRARCTLRADDITRAC---HRTGGR--VRTLNMDRFHPLFNASPGSDLPV----VRRDDESGGGGVVLQCMKWGLIPSF

Q6IND6 Abasic site processing protein HMCES1.1e-0634.44Show/hide
Query:  MCGRARCTLRADDITRAC-------HRTGGRVRTLNMDRFHPLFNASPGSDLPVV------RRDDESGGGGVVLQCMKWGLIPSFTEKFE
        MCGR  CTL  DD+++AC        +   + R  + D++ P +N SP S+ PV+      ++D +S     VL  M+WGLIPS+  + +
Subjt:  MCGRARCTLRADDITRAC-------HRTGGRVRTLNMDRFHPLFNASPGSDLPVV------RRDDESGGGGVVLQCMKWGLIPSFTEKFE

Q6P7N4 Abasic site processing protein HMCES2.6e-0839.18Show/hide
Query:  MCGRARCTLRADDITRAC---HRTGGRV----RTLNMDRFHPLFNASPGSDLPVV------RRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGR  CTL  DD+ +AC    + GGR     R  + D++ P +N SP S+ PV+      ++D +S     VL  M+WGLIPS+   F +P+  KM
Subjt:  MCGRARCTLRADDITRAC---HRTGGRV----RTLNMDRFHPLFNASPGSDLPVV------RRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKM

Q8R1M0 Abasic site processing protein HMCES8.6e-0433.33Show/hide
Query:  MCGRARCTLRADDITRAC---HRTGGR--VRTLNMDRFHPLFNASPGSDLPV----VRRDDESGGGGVVLQCMKWGLIPSF
        MCGR  C L  + +TRAC    R G R   +  + D++ P +N SP S  PV    +  + ++     ++  M+WGL+PS+
Subjt:  MCGRARCTLRADDITRAC---HRTGGR--VRTLNMDRFHPLFNASPGSDLPV----VRRDDESGGGGVVLQCMKWGLIPSF

Q96FZ2 Abasic site processing protein HMCES5.0e-0432.1Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRT-----LNMDRFHPLFNASPGSDLPV----VRRDDESGGGGVVLQCMKWGLIPSF
        MCGR  C L  D +TRAC     R +       + D++ P +N SP S+ PV    +  + ++     ++  M+WGL+PS+
Subjt:  MCGRARCTLRADDITRACHRTGGRVRT-----LNMDRFHPLFNASPGSDLPV----VRRDDESGGGGVVLQCMKWGLIPSF

Arabidopsis top hitse value%identityAlignment
AT2G26470.1 unknown protein1.8e-2558.82Show/hide
Query:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDES-GGGGVVLQCMKWGLIPSFTEKFEKPNYFKM
        MCGR RCTLR DD+ RA HR     R L++DR+ P +N +PGS +PV+RRD+E   G GVV+ CMKWGL+PSFT+K +KP++FKM
Subjt:  MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDES-GGGGVVLQCMKWGLIPSFTEKFEKPNYFKM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGAAGAGCCCGTTGTACTCTTCGAGCTGATGACATCACCAGGGCCTGCCACCGCACCGGCGGCCGTGTCCGCACCCTCAACATGGACCGTTTTCATCCGCTGTT
CAATGCCTCCCCGGGCTCGGATTTGCCGGTTGTTCGTCGAGACGATGAATCTGGTGGCGGAGGGGTCGTCCTCCAGTGCATGAAATGGGGGCTGATTCCTAGTTTTACTG
AAAAATTCGAGAAACCTAATTACTTCAAGATGGTGATTTTTCCTCTGTTGTCTTTTGGCCTTTTATCTGGTTGTTGTGTAGAGTCTTATTTTGAAATGACAGTTACTATT
TTCGTTACCATCAGTAAGCATTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGAAGAGCCCGTTGTACTCTTCGAGCTGATGACATCACCAGGGCCTGCCACCGCACCGGCGGCCGTGTCCGCACCCTCAACATGGACCGTTTTCATCCGCTGTT
CAATGCCTCCCCGGGCTCGGATTTGCCGGTTGTTCGTCGAGACGATGAATCTGGTGGCGGAGGGGTCGTCCTCCAGTGCATGAAATGGGGGCTGATTCCTAGTTTTACTG
AAAAATTCGAGAAACCTAATTACTTCAAGATGGTGATTTTTCCTCTGTTGTCTTTTGGCCTTTTATCTGGTTGTTGTGTAGAGTCTTATTTTGAAATGACAGTTACTATT
TTCGTTACCATCAGTAAGCATTTGTAG
Protein sequenceShow/hide protein sequence
MCGRARCTLRADDITRACHRTGGRVRTLNMDRFHPLFNASPGSDLPVVRRDDESGGGGVVLQCMKWGLIPSFTEKFEKPNYFKMVIFPLLSFGLLSGCCVESYFEMTVTI
FVTISKHL