; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10022782 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022782
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPSII 6.1 kDa protein
Genome locationChr05:28227751..28229005
RNA-Seq ExpressionHG10022782
SyntenyHG10022782
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]3.6e-5993.48Show/hide
Query:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS+L MGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]3.2e-6093.43Show/hide
Query:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA+A VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]4.2e-6094.2Show/hide
Query:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]5.2e-5888.28Show/hide
Query:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLL--------GLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTE
        MAAVTSAA+A VRTSLVQNR LP+ASPAPFLL        GLP+LGKKGGVRCSMEGKGNGEVE+KSS+LGMGASLIAAACA TMSSPAMALVDERLSTE
Subjt:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLL--------GLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]5.5e-6093.43Show/hide
Query:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A  RTSLVQNR LPAASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein1.6e-6093.43Show/hide
Query:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA+A VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein2.1e-6094.2Show/hide
Query:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein1.7e-5993.48Show/hide
Query:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS+L MGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein2.8e-5788.32Show/hide
Query:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA+A VR+SLVQNR LPAASP+PFLLGLP+LGKKGGVRCSMEGK NG+VE+KSS+LGMGASL+AAA A +MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1JTT6 PSII 6.1 kDa protein1.2e-5587.59Show/hide
Query:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA+A VR+SLVQNR  PAASPAPFLLGLP+L KKG VRCSMEGK NGEVE+KSS+LGMGASL+AAA A +MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic3.0e-3260.99Show/hide
Query:  MAAVTSAAS--AAVRTSLVQNRRLPAASPAPFLLGLPSLG-KKGGVRCSMEGKGNGEVESKSSSLGMGASLIA-AACAVTMSSPAMALVDERLSTEGTGL
        MA+ T++AS  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA    MS+PAMALVDER+STEGTGL
Subjt:  MAAVTSAAS--AAVRTSLVQNRRLPAASPAPFLLGLPSLG-KKGGVRCSMEGKGNGEVESKSSSLGMGASLIA-AACAVTMSSPAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        PFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic7.6e-3661.87Show/hide
Query:  MAAVTSAASAAV--RTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPF
        MA +T+++SA++  R SLV N R+  +S    +LGLPS+ K+  V CS+E K +    + +++  MGASL+AAA A T+S+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAASAAV--RTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWIL GVFGLIWA Y VY S LEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic8.1e-2253.44Show/hide
Query:  SAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGG--VRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNN
        +  SAA  TS+V   R   A P    LGLP +  +    VRC+   +        ++  G GASL+A A     ++PAMALVDER+STEGTGL  GLSNN
Subjt:  SAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGG--VRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNN

Query:  LLGWILLGVFGLIWAFYIVYTSTLEEDEESG
        LLGWILLGVFGLIW+ Y +YTS LEEDEESG
Subjt:  LLGWILLGVFGLIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic5.5e-1041.25Show/hide
Query:  SSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA + +    L   ED + GL L
Subjt:  SSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.1e-3360.99Show/hide
Query:  MAAVTSAAS--AAVRTSLVQNRRLPAASPAPFLLGLPSLG-KKGGVRCSMEGKGNGEVESKSSSLGMGASLIA-AACAVTMSSPAMALVDERLSTEGTGL
        MA+ T++AS  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA    MS+PAMALVDER+STEGTGL
Subjt:  MAAVTSAAS--AAVRTSLVQNRRLPAASPAPFLLGLPSLG-KKGGVRCSMEGKGNGEVESKSSSLGMGASLIA-AACAVTMSSPAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        PFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCTCTGCCGCCGTGCGCACTTCTCTGGTGCAGAACCGCCGACTGCCGGCCGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTT
GGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAAAGCAAGTCAAGCAGCTTGGGGATGGGGGCATCGTTGATAGCTGCGGCGTGTG
CTGTGACGATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGTACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTG
GGGGTTTTTGGTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGTCACCTCCGCCGCCTCTGCCGCCGTGCGCACTTCTCTGGTGCAGAACCGCCGACTGCCGGCCGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTT
GGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAAAGCAAGTCAAGCAGCTTGGGGATGGGGGCATCGTTGATAGCTGCGGCGTGTG
CTGTGACGATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGTACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTG
GGGGTTTTTGGTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA
Protein sequenceShow/hide protein sequence
MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL
GVFGLIWAFYIVYTSTLEEDEESGLSL