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HG10022901 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022901
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:29446542..29447784
RNA-Seq ExpressionHG10022901
SyntenyHG10022901
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]1.9e-0831.51Show/hide
Query:  KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKIL
        K+      N   N A + +V+R+  G+VM+++ K      S  + E LAV+E   LA   GFFP VLESD+  V           S++G+ + D+     
Subjt:  KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKIL

Query:  DPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV
        D   F F+      N++AHGLA+L  +N  +  WS   P+ + ++V
Subjt:  DPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV

TXG48983.1 hypothetical protein EZV62_024858 [Acer yangbiense]1.0e-0931.85Show/hide
Query:  DNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCR
        +NY  +++V+R+ +G+VM++  K      S  + E LAVVE   LA + GFFP VLESD+  V       +   SE+G+ L D+     +   F F +  
Subjt:  DNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCR

Query:  FKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV
            ++AHGLA+L  ++  +  W    P+ + ++V
Subjt:  FKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]4.6e-0733.33Show/hide
Query:  IVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMA
        I++RD  G+V+ + TK+L HV S    E LA VE   +A++ G  P++LE+DS  ++  F    E +S+ G  ++ +K  +   +   + F +  GN +A
Subjt:  IVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMA

Query:  HGLAQ
        H LA+
Subjt:  HGLAQ

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]9.0e-1132.19Show/hide
Query:  RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLK
        R+Y K+         D +A + I++R+  G+VM + TK+L ++ S  M E +  VE   LA  +G  P++LE+DSS +F  F    E +SE G  +   K
Subjt:  RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLK

Query:  RKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITL
              +   F F + +GN+ AH LA+     R    W E +P+ L
Subjt:  RKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITL

XP_024957833.1 uncharacterized protein LOC112499264 [Citrus sinensis]6.0e-0728.08Show/hide
Query:  KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKIL
        KV V    N+G     + +V+RD  G V+    K +   G  + IE  A+     +A D G+ PL +ESDS  V    L      +E+   ++D++ KI 
Subjt:  KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKIL

Query:  DPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV
           +   Q    + N MAH +A++  A   D  W E +P  +++ +
Subjt:  DPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV

TrEMBL top hitse value%identityAlignment
A0A5C7GQX3 RNase H domain-containing protein9.1e-0931.51Show/hide
Query:  KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKIL
        K+      N   N A + +V+R+  G+VM+++ K      S  + E LAV+E   LA   GFFP VLESD+  V           S++G+ + D+     
Subjt:  KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKIL

Query:  DPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV
        D   F F+      N++AHGLA+L  +N  +  WS   P+ + ++V
Subjt:  DPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV

A0A5C7GW84 RNase H domain-containing protein4.8e-1031.85Show/hide
Query:  DNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCR
        +NY  +++V+R+ +G+VM++  K      S  + E LAVVE   LA + GFFP VLESD+  V       +   SE+G+ L D+     +   F F +  
Subjt:  DNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCR

Query:  FKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV
            ++AHGLA+L  ++  +  W    P+ + ++V
Subjt:  FKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV

A0A6J1CDQ4 uncharacterized protein LOC1110105332.2e-0733.33Show/hide
Query:  IVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMA
        I++RD  G+V+ + TK+L HV S    E LA VE   +A++ G  P++LE+DS  ++  F    E +S+ G  ++ +K  +   +   + F +  GN +A
Subjt:  IVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMA

Query:  HGLAQ
        H LA+
Subjt:  HGLAQ

A0A6J1CIF1 uncharacterized protein LOC1110112374.4e-1132.19Show/hide
Query:  RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLK
        R+Y K+         D +A + I++R+  G+VM + TK+L ++ S  M E +  VE   LA  +G  P++LE+DSS +F  F    E +SE G  +   K
Subjt:  RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLK

Query:  RKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITL
              +   F F + +GN+ AH LA+     R    W E +P+ L
Subjt:  RKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITL

A0A6J5XRI2 RNase H domain-containing protein6.5e-0732.24Show/hide
Query:  RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLK
        R+Y K+ V      GD+   V +VVR+  GE M A  + L         E +A +E    AID+GF   +LE D+     S L   E     G+ ++++K
Subjt:  RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLK

Query:  RKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCDE--AWSEPYPITLLDVV
          + +      Q+    GN++AH LAQ  F   C+E   W E  PI LL V+
Subjt:  RKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCDE--AWSEPYPITLLDVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCGAGTGTATGTTAAGGTTGGAGTTAAAAATCAAAATAATGAAGGTGATAATTATGCTGATGTGAGTATTGTGGTCAGAGATGTCGAGGGTGAAGTTATGATGGC
GACGACAAAATTTCTGCATCACGTTGGGTCGACGAGTATGATAGAAGGATTAGCAGTTGTTGAAGTTTTCCATTTGGCTATTGATTTGGGATTTTTTCCACTCGTTTTAG
AATCAGACTCTTCTTGTGTGTTTTTCAGCTTCTTATACGTAATAGAGAGGATCTCAGAGTTAGGTATGCAGTTACAGGATCTTAAAAGAAAGATTTTGGATCCTATGTTG
TTCAAATTCCAGTTTTGTCGTTTTAAAGGTAATGAGATGGCTCATGGTCTTGCTCAACTAACGTTTGCTAATCGGTGTGACGAAGCCTGGTCAGAGCCTTATCCCATAAC
TCTTTTGGATGTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCCGAGTGTATGTTAAGGTTGGAGTTAAAAATCAAAATAATGAAGGTGATAATTATGCTGATGTGAGTATTGTGGTCAGAGATGTCGAGGGTGAAGTTATGATGGC
GACGACAAAATTTCTGCATCACGTTGGGTCGACGAGTATGATAGAAGGATTAGCAGTTGTTGAAGTTTTCCATTTGGCTATTGATTTGGGATTTTTTCCACTCGTTTTAG
AATCAGACTCTTCTTGTGTGTTTTTCAGCTTCTTATACGTAATAGAGAGGATCTCAGAGTTAGGTATGCAGTTACAGGATCTTAAAAGAAAGATTTTGGATCCTATGTTG
TTCAAATTCCAGTTTTGTCGTTTTAAAGGTAATGAGATGGCTCATGGTCTTGCTCAACTAACGTTTGCTAATCGGTGTGACGAAGCCTGGTCAGAGCCTTATCCCATAAC
TCTTTTGGATGTTGTTTAG
Protein sequenceShow/hide protein sequence
MIRVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPML
FKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV