CuGenDBv2

Gene ID	HG10022972
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	Chr05:30090615..30092599
RNA-Seq Expression	HG10022972
Synteny	HG10022972
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

3.9e-165

90.28

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

1.3e-163

89.66

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS  R PW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

1.5e-164

89.97

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

1.5e-164

89.97

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

9.3e-167

92.79

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        MSATFPTSSVVSSSHSNEFIK FYL+SKGNVSF+S+ RVPWKFMRNIQPSLG+ CIMLKSTSIKCVKPTYQSLFE+NSIITDW D +GDIEEMGSPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRV K VKDYPFGTPVQISVDVTRKEK+LRLDGIVKTVITLNCYRCCE APEC+FSNFSII
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQDMFKTYDGNSDEDDEELVDLDDQLYFP +EKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLK+QMQKNS
Subjt:  KKNDFGPLGNLKRQMQKNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

1.1e-160

87.46

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHSNEFI  FY +SKG VSF+S+FRVPW+ +RNIQPSLG+PCI +KST+IKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK K+LRLDGIVKTVITLNCY CCEPAPEC+FSNFSII
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISG+DMFKT +GNSDEDDEEL+DLDDQLYFPP+ KEIDISKNIRDILHLEITMN ICDPGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLG+LKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

7.2e-165

89.97

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

7.2e-165

89.97

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

A0A5A7VN29 Uncharacterized protein

1.9e-165

90.28

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

A0A5D3D2J4 Uncharacterized protein

6.1e-164

89.66

Show/hide

Query:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA
        M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS  R PW+FMRNIQPSLG+PCI +KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GA
Subjt:  MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSII

Query:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNS
        KKNDFGPLGNLKR+MQ NS
Subjt:  KKNDFGPLGNLKRQMQKNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

5.8e-55

51.08

Show/hide

Query:  VDQEGDIEEMG--SPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR--VTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVIT
        V+ E D  + G  SPW+GAV+Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL      +    P  TPV +SVDVTR+  RLRLDGIV+TVIT
Subjt:  VDQEGDIEEMG--SPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR--VTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVIT

Query:  LNCYRCCEPAPECVFSNFSIILSEEPI-EEPDVINIGTISGQDMFK-------TYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNA
        L C+RC EPAP+ +F+NFS++L+E+P+ EEPD   +GTI  +D  K         DG+ D      +D DD+L+FP  +KEIDISK+IRD++HLEIT++A
Subjt:  LNCYRCCEPAPECVFSNFSIILSEEPI-EEPDVINIGTISGQDMFK-------TYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNA

Query:  ICDPGCKGMCLNCGINLN-TGSCNCSKQAVK
        +C+P CKG+CL CG NLN T SC C  + V+
Subjt:  ICDPGCKGMCLNCGINLN-TGSCNCSKQAVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.7e-83

62.35

Show/hide

Query:  QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRL
        +S  E ++I  DW DQE +IE+ GSPW+G+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK VKDYP GTPVQ+SVDV RK+K+LRL
Subjt:  QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMN
        DGIV+TVITL C RC E   E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+  +D +D+L+FPP  KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMN

Query:  AICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK
        AICD  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ QMQ+
Subjt:  AICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

1.2e-84

62.35

Show/hide

Query:  QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRL
        +S  E ++I  DW DQE +IE+ GSPW+G+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK VKDYP GTPVQ+SVDV RK+K+LRL
Subjt:  QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMN
        DGIV+TVITL C RC E   E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+  +D +D+L+FPP  KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMN

Query:  AICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK
        AICD  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ QMQ+
Subjt:  AICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK

Sequences

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CDS sequence

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ATGTCAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGATTTCTATTTGCAATCCAAAGGGAATGTTTCTTTCAATTCGTATTT
CCGAGTTCCATGGAAATTTATGAGAAATATTCAGCCAAGCTTGGGTAACCCATGTATTATGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTTT
TTGAAGAAAATTCAATAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGATGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCT
CATGTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTACGCGTAACGAAGGCTGTGAA
AGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAGACTGTCATCACTCTCAATTGTTATA
GGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATAGGAACCATTAGCGGGCAG
GATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTGGTTGATTTGGATGATCAACTCTATTTTCCTCCTGTGGAGAAAGAAATAGATATATCAAA
GAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCGATATGTGATCCGGGATGCAAAGGCATGTGTCTGAATTGTGGCATAAATTTGAATACTGGAAGCTGTA
ACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCGTAA

mRNA sequence

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Protein sequence

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MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVS
HVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQ
DMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQKNS

HG10022972 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome