; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10022996 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022996
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationChr05:30335010..30335489
RNA-Seq ExpressionHG10022996
SyntenyHG10022996
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]9.6e-6488.05Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MAN I IFLTFFLFSL KFSLLS A+ VAKDQVGCSMCS CDNPCQLPPP PPPPVV+CPPP  PPPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SSVQPY P+DGGQFPG+APPPPNPILPYFPYYYY+PPSAS KSVPFSWK LPLPFLII+
Subjt:  SSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

KAG6575794.1 hypothetical protein SDJN03_26433, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5078.26Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP
        MA+L SIFLT FL SLSKFS  S ATV A+DQVGCSMC++CDNPCQLPP  PPP +VDCP    PPPPPPPSPPPPLPT +CPPPPSPPSCD CVYPSPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP

Query:  PPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        PP      TPTDGGQ+PGLAPPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  PPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

XP_022953998.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]4.8e-5580.75Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP
        MA+L SIFLT FL SLSKFS LS  TV A+DQVGCSMC++CDNPCQLPP  PPP +VDCP    PPPPPPPSPPPPL T +CPPPPSPPSCD CVYPSPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP

Query:  PPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        PPSS+QPYTPTDGGQ+PGLAPPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  PPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

XP_022991777.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.9e-5681.88Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP
        MA+L SIFLT FLFSLSKFS LS ATV A+DQVGCSMCS+CDNPCQLPPP PPPP   VVDCPPPP P   PPPPLP  +CPPPPSPPSCD CVYPSPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP

Query:  PSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        PSS+QPYTPTDGGQ+PG+APPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  PSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

XP_023549397.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]1.0e-5784.08Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS
        MA+L SIFLT FL SLSKFS LS ATV A+DQVGCSMCS+CDNPCQLPP  PPP +VDC PPPPPPPSPPPPLPT +CPPPPSPPSCD CVYPSPPPPSS
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS

Query:  VQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        +QPYTPTDGGQ+PGLAPPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  VQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein5.5e-6589.94Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPP--PPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MANLISIFLTFFL SL+KFSLLS AT VAKDQVGCSMCSTCDNPCQLPPP PPPPVV+CPPPP  PPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPP--PPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SSVQPY P+ GGQFPG+APPPPNPILPYFPYYYY+PPSAS KSVPFSWKFL LPFLIIL
Subjt:  SSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A5D3D2P5 Extensin-24.6e-6488.05Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MAN I IFLTFFLFSL KFSLLS A+ VAKDQVGCSMCS CDNPCQLPPP PPPPVV+CPPP  PPPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SSVQPY P+DGGQFPG+APPPPNPILPYFPYYYY+PPSAS KSVPFSWK LPLPFLII+
Subjt:  SSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A6J1GPW6 leucine-rich repeat extensin-like protein 32.3e-5580.75Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP
        MA+L SIFLT FL SLSKFS LS  TV A+DQVGCSMC++CDNPCQLPP  PPP +VDCP    PPPPPPPSPPPPL T +CPPPPSPPSCD CVYPSPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP

Query:  PPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        PPSS+QPYTPTDGGQ+PGLAPPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  PPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A6J1JMT5 leucine-rich repeat extensin-like protein 39.4e-5781.88Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP
        MA+L SIFLT FLFSLSKFS LS ATV A+DQVGCSMCS+CDNPCQLPPP PPPP   VVDCPPPP P   PPPPLP  +CPPPPSPPSCD CVYPSPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP

Query:  PSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        PSS+QPYTPTDGGQ+PG+APPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  PSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A6J1KR41 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like1.8e-4770Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS
        MANL+SI+ TF LF+LSKFS LS AT VAKDQVGCSMCS+CDNPCQLPPP PPPP   CPPPPPPP                 PPSC TCV+PSP PP+S
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS

Query:  VQPYTPTDGGQFPGLA-PPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL
        VQPY P DGGQFPGLA PPPPNPILPY+PYYYY+PP+AS +SV  SWK LPL  LII+CL
Subjt:  VQPYTPTDGGQFPGLA-PPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06750.1 hydroxyproline-rich glycoprotein family protein3.1e-0442.11Show/hide
Query:  VVAKDQ-VGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILP
        V +KD+ V C+MCS+CDNPC  P PS         PPPPPP S          PPPPS  S     YP P        Y P       G  PPPPNPI+P
Subjt:  VVAKDQ-VGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILP

Query:  YFPYYYYTPPSASAKSVPFSWKFLPLPFLIILC
        YFP+YY+TPP   + S       L   F ++LC
Subjt:  YFPYYYYTPPSASAKSVPFSWKFLPLPFLIILC

AT3G22800.1 Leucine-rich repeat (LRR) family protein7.0e-0451.58Show/hide
Query:  CDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPP
        C  P   PPP PPPP    PPPPPPPP PPPP P     PPP PPS    VYP PPPP  V P  P+    +P   PPPP+P     PY Y +PP
Subjt:  CDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILPYFPYYYYTPP

AT4G16140.1 proline-rich family protein4.5e-1144.97Show/hide
Query:  IFLTFFLFSLSKFSLLSFATVVAKDQVG-CSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLP-TSQCPPPPS----------PPSCDTCVYPS
        +FL FF F+ +        T+ +  Q+  C+MC++CDNPCQ P PS        PPPPP  PSPPPP P T+ CPPPPS          PP+  +  Y  
Subjt:  IFLTFFLFSLSKFSLLSFATVVAKDQVG-CSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLP-TSQCPPPPS----------PPSCDTCVYPS

Query:  PPPPSSVQPY--TPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS
        PP  SS   Y   P  GG +P    PPPNPI+PYFP+YYY PP  S  S
Subjt:  PPPPSSVQPY--TPTDGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS

AT5G49280.1 hydroxyproline-rich glycoprotein family protein3.7e-1344.08Show/hide
Query:  TVVAKDQ-VGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSC---DTCVYPSP---------PPP----SSVQPYTPTD
        TV +KD+ V C+MCS+CDNPC         PV   PPPP P   PPP  PT+ CPPPPSPPS     +  YP P         PPP         Y P  
Subjt:  TVVAKDQ-VGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSC---DTCVYPSP---------PPP----SSVQPYTPTD

Query:  GGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS-VPFSWKFLPLPFLIILCL
         G +P   PPPPNPI+PYFP+YY+TPP  S       S+  +   F + LCL
Subjt:  GGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS-VPFSWKFLPLPFLIILCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATCTCATCTCCATTTTCCTCACTTTCTTCCTCTTTTCACTCTCCAAATTTTCCCTTCTCTCTTTCGCTACCGTCGTCGCCAAGGATCAGGTTGGCTGTTCCAT
GTGCTCAACTTGTGACAACCCATGCCAACTCCCACCGCCGTCGCCTCCTCCACCGGTTGTTGACTGCCCTCCGCCGCCCCCTCCACCTCCATCTCCGCCACCGCCACTCC
CCACTTCCCAATGCCCTCCGCCTCCGTCGCCTCCCTCATGTGATACATGCGTCTACCCTTCTCCGCCGCCGCCGTCTTCCGTCCAGCCGTACACTCCGACCGACGGTGGC
CAATTTCCCGGCCTTGCTCCGCCGCCGCCGAACCCAATTTTACCGTATTTTCCTTACTATTATTACACTCCCCCCTCTGCTTCTGCCAAATCCGTTCCATTTTCATGGAA
ATTTTTGCCTCTGCCTTTCTTAATCATTCTTTGCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATCTCATCTCCATTTTCCTCACTTTCTTCCTCTTTTCACTCTCCAAATTTTCCCTTCTCTCTTTCGCTACCGTCGTCGCCAAGGATCAGGTTGGCTGTTCCAT
GTGCTCAACTTGTGACAACCCATGCCAACTCCCACCGCCGTCGCCTCCTCCACCGGTTGTTGACTGCCCTCCGCCGCCCCCTCCACCTCCATCTCCGCCACCGCCACTCC
CCACTTCCCAATGCCCTCCGCCTCCGTCGCCTCCCTCATGTGATACATGCGTCTACCCTTCTCCGCCGCCGCCGTCTTCCGTCCAGCCGTACACTCCGACCGACGGTGGC
CAATTTCCCGGCCTTGCTCCGCCGCCGCCGAACCCAATTTTACCGTATTTTCCTTACTATTATTACACTCCCCCCTCTGCTTCTGCCAAATCCGTTCCATTTTCATGGAA
ATTTTTGCCTCTGCCTTTCTTAATCATTCTTTGCCTCTAA
Protein sequenceShow/hide protein sequence
MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQPYTPTDGG
QFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL