; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10023034 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023034
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription factor UPBEAT1
Genome locationChr05:30630415..30630867
RNA-Seq ExpressionHG10023034
SyntenyHG10023034
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046707.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]7.2e-3770.93Show/hide
Query:  MGVSQETLLQIQLNMED-QTTQDH-IIIKE-RNNSNG--SIWKKTLSNEEEEEEEEEE-NSKSKGK-RCNT-----TRRRRSRSNSLILKKRRR------
        MGVSQETLLQIQLNMED +TTQD  IIIKE RN+S+   SIWKK    EE  EEE++E NSK K K  CN      T RRRSRSNSLILKKR R      
Subjt:  MGVSQETLLQIQLNMED-QTTQDH-IIIKE-RNNSNG--SIWKKTLSNEEEEEEEEEE-NSKSKGK-RCNT-----TRRRRSRSNSLILKKRRR------

Query:  STSGRIEQRVNTLRNLVPNMNN---DDENC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        S++ RIEQRVN LRNLVPN +N   DDE+C  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  STSGRIEQRVNTLRNLVPNMNN---DDENC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2260Show/hide
Query:  MGVSQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVP
        MG    TLL +QLNME + TQD II       NGSI KK+        EEE++N+KS        RRRR  S SL  K RR ST  RI QRV TLRNLVP
Subjt:  MGVSQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVP

Query:  NMN--NDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSI
        NMN  ND++N  GSLEQLFT TADYILSLQTRVR M+TLVDVLSG SS I
Subjt:  NMN--NDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSI

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2253.69Show/hide
Query:  MGVSQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVP
        MGV  ETLL +QLNM+ + +QD                +T   E++E++E++E  ++  K  N    RR RS++ ++KKRR  +S RIEQRV+TLRNLVP
Subjt:  MGVSQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVP

Query:  NMNNDD---ENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS
        NMNN++   E+CVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  NMNNDD---ENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2154.36Show/hide
Query:  MGVSQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVP
        MGV  ETLL +QLNM++ +  +                   S EE+++E++E  +KS         RRR  SNSL +KKRR  +S RIEQRV+TLRNLVP
Subjt:  MGVSQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVP

Query:  NMNNDD---ENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS
        NMNN++   E+CVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  NMNNDD---ENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]1.5e-3768.82Show/hide
Query:  MGVSQETLLQIQLNMED-QTTQDHII----IKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKR--CN----TTRRRRSRSNSLILKKRRR----STS
        MGVSQETLLQIQLNMED QTTQD II    I+  N+++ S WKK   N  +EEE +E NSK K  +  CN     T RRRSRSNSLILKKR R    S+S
Subjt:  MGVSQETLLQIQLNMED-QTTQDHII----IKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKR--CN----TTRRRRSRSNSLILKKRRR----STS

Query:  GRIEQRVNTLRNLVPNMNN-----DDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
         RIEQRVNTLR+LVPN +N      DE+CVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  GRIEQRVNTLRNLVPNMNN-----DDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

TrEMBL top hitse value%identityAlignment
A0A072VQ70 Putative transcription factor bHLH family1.0e-0439.66Show/hide
Query:  ERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVPNMNNDDENCVGSLEQLFTQTADYILSL
        E NN++  +W K L               ++ K+   T++R  R     L KRRR + G I++RV TL+ L+P   N DE+    L+ LF +TA+YILSL
Subjt:  ERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVPNMNNDDENCVGSLEQLFTQTADYILSL

Query:  QTRVRLMKTLVDVLSG
        Q RV +MK +VDVL+G
Subjt:  QTRVRLMKTLVDVLSG

A0A0A0K6D9 Uncharacterized protein7.0e-3868.82Show/hide
Query:  MGVSQETLLQIQLNMED-QTTQDHII----IKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKR--CN----TTRRRRSRSNSLILKKRRR----STS
        MGVSQETLLQIQLNMED QTTQD II    I+  N+++ S WKK   N  +EEE +E NSK K  +  CN     T RRRSRSNSLILKKR R    S+S
Subjt:  MGVSQETLLQIQLNMED-QTTQDHII----IKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKR--CN----TTRRRRSRSNSLILKKRRR----STS

Query:  GRIEQRVNTLRNLVPNMNN-----DDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
         RIEQRVNTLR+LVPN +N      DE+CVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  GRIEQRVNTLRNLVPNMNN-----DDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

A0A445F6P8 Transcription factor UPBEAT13.5e-0538Show/hide
Query:  MGVSQETLLQIQLNMED--QTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGR-----IEQRVN
        MG+S +T L +  +++D  Q T+++    + ++S G +W K L+ + +         K KG + +  R RR      IL   RRS S R     I +RV 
Subjt:  MGVSQETLLQIQLNMED--QTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGR-----IEQRVN

Query:  TLRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG
        TL++LVPN ++        L+ LF QTADYILSLQTRVR+M+ +V VL+G
Subjt:  TLRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG

A0A5A7TXU1 Transcription factor UPBEAT13.5e-3770.93Show/hide
Query:  MGVSQETLLQIQLNMED-QTTQDH-IIIKE-RNNSNG--SIWKKTLSNEEEEEEEEEE-NSKSKGK-RCNT-----TRRRRSRSNSLILKKRRR------
        MGVSQETLLQIQLNMED +TTQD  IIIKE RN+S+   SIWKK    EE  EEE++E NSK K K  CN      T RRRSRSNSLILKKR R      
Subjt:  MGVSQETLLQIQLNMED-QTTQDH-IIIKE-RNNSNG--SIWKKTLSNEEEEEEEEEE-NSKSKGK-RCNT-----TRRRRSRSNSLILKKRRR------

Query:  STSGRIEQRVNTLRNLVPNMNN---DDENC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        S++ RIEQRVN LRNLVPN +N   DDE+C  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  STSGRIEQRVNTLRNLVPNMNN---DDENC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

I1NHA0 BHLH transcription factor1.0e-0438.26Show/hide
Query:  MGV-SQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGR-----IEQRVNT
        MG+ SQ +L+   L    Q T+++    + ++S G +W K L+ + +         K KG + +  R RR      IL   RRS S R     I +RV T
Subjt:  MGV-SQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGR-----IEQRVNT

Query:  LRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG
        L++LVPN ++        L+ LF QTADYILSLQTRVR+M+ +V VL+G
Subjt:  LRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT14.9e-0437.8Show/hide
Query:  RRRRSRSNSLILKKRRRSTSGR-----IEQRVNTLRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS
        R RR+    ++++ R+   + R     I +RV TL+ LVPN    +      L+ LF QTADYIL+L+ +V++M+T+V VL+
Subjt:  RRRRSRSNSLILKKRRRSTSGR-----IEQRVNTLRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators3.5e-0537.8Show/hide
Query:  RRRRSRSNSLILKKRRRSTSGR-----IEQRVNTLRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS
        R RR+    ++++ R+   + R     I +RV TL+ LVPN    +      L+ LF QTADYIL+L+ +V++M+T+V VL+
Subjt:  RRRRSRSNSLILKKRRRSTSGR-----IEQRVNTLRNLVPNMNNDDENCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCAAACAACACAAGATCACATCATCATCAAAGAGAGGAACAACTCAAATGGATCCATATG
GAAGAAAACATTATCAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATAGCAAAAGCAAAGGCAAAAGATGCAATACAACAAGAAGAAGAAGATCAAGAAGCAACT
CATTGATATTGAAGAAGAGAAGAAGATCAACATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACGACGACGAAAACTGTGTC
GGATCATTAGAACAGCTTTTCACTCAGACAGCTGATTATATATTGTCTTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTC
TATTGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCAAACAACACAAGATCACATCATCATCAAAGAGAGGAACAACTCAAATGGATCCATATG
GAAGAAAACATTATCAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATAGCAAAAGCAAAGGCAAAAGATGCAATACAACAAGAAGAAGAAGATCAAGAAGCAACT
CATTGATATTGAAGAAGAGAAGAAGATCAACATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACGACGACGAAAACTGTGTC
GGATCATTAGAACAGCTTTTCACTCAGACAGCTGATTATATATTGTCTTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTC
TATTGATGAGTGA
Protein sequenceShow/hide protein sequence
MGVSQETLLQIQLNMEDQTTQDHIIIKERNNSNGSIWKKTLSNEEEEEEEEEENSKSKGKRCNTTRRRRSRSNSLILKKRRRSTSGRIEQRVNTLRNLVPNMNNDDENCV
GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE