; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10023084 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023084
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L44
Genome locationChr05:31076236..31077632
RNA-Seq ExpressionHG10023084
SyntenyHG10023084
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006646 - phosphatidylethanolamine biosynthetic process (biological process)
GO:0016540 - protein autoprocessing (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0004609 - phosphatidylserine decarboxylase activity (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0005509 - calcium ion binding (molecular function)
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3026450.1 60S ribosomal L44 [Olea europaea subsp. europaea]3.8e-5395.45Show/hide
Query:  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG
        +S    VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG
Subjt:  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG

Query:  DKKGKGTSLF
        DKKGKGTSLF
Subjt:  DKKGKGTSLF

KAG2409915.1 60S ribosomal protein [Vigna angularis]1.7e-5393.75Show/hide
Query:  PPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
        PP +    VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
Subjt:  PPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI

Query:  GGDKKGKGTSLF
        GGDKKGKGTSLF
Subjt:  GGDKKGKGTSLF

PPS03753.1 hypothetical protein GOBAR_AA16925 [Gossypium barbadense]3.8e-5398.13Show/hide
Query:  VNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK
        +N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK
Subjt:  VNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

RVX02874.1 60S ribosomal protein L44 [Vitis vinifera]3.8e-5399.06Show/hide
Query:  NGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
        N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
Subjt:  NGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG

Query:  KGTSLF
        KGTSLF
Subjt:  KGTSLF

XP_017635996.1 PREDICTED: 60S ribosomal protein L44-like [Gossypium arboreum]1.7e-5396.36Show/hide
Query:  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG
        M  V+ VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG
Subjt:  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG

Query:  DKKGKGTSLF
        DKKGKGTSLF
Subjt:  DKKGKGTSLF

TrEMBL top hitse value%identityAlignment
A0A0B0PY50 60S ribosomal L448.3e-5496.36Show/hide
Query:  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG
        M  V+ VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG
Subjt:  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGG

Query:  DKKGKGTSLF
        DKKGKGTSLF
Subjt:  DKKGKGTSLF

A0A2P5XK79 Uncharacterized protein1.8e-5398.13Show/hide
Query:  VNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK
        +N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK
Subjt:  VNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

A0A438J1R3 60S ribosomal protein L441.8e-5399.06Show/hide
Query:  NGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
        N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
Subjt:  NGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG

Query:  KGTSLF
        KGTSLF
Subjt:  KGTSLF

A0A5D2QY53 Uncharacterized protein (Fragment)2.4e-5397.25Show/hide
Query:  STVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S V  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  STVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

A0A5N6PMS3 Uncharacterized protein1.8e-5393.75Show/hide
Query:  PPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
        P  S  + VNVPKTKKTYCK+KECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
Subjt:  PPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI

Query:  GGDKKGKGTSLF
        GGDKKGKGTSLF
Subjt:  GGDKKGKGTSLF

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a5.7e-5293.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

O59870 60S ribosomal protein L443.2e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ50 60S ribosomal protein L445.4e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ51 60S ribosomal protein L445.4e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

Q96499 60S ribosomal protein L441.5e-55100Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein4.1e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein4.1e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein1.1e-4592.39Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGCAGTTAAATATTGGGCTTGCAATGGACCGTGGGCTAAAGTTATCAGAAATCGGGCCCATAATCGGCCTCCGATGTCCACAGTTAATGGTGTGAACGTTCCCAA
GACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTT
ATGATCGTAAACAATCAGGATATGGAGGCCAAACCAAGCCCGTCTTTCATAAGAAGGCCAAAACCACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCAC
GTCTCACAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGGCAGTTAAATATTGGGCTTGCAATGGACCGTGGGCTAAAGTTATCAGAAATCGGGCCCATAATCGGCCTCCGATGTCCACAGTTAATGGTGTGAACGTTCCCAA
GACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTT
ATGATCGTAAACAATCAGGATATGGAGGCCAAACCAAGCCCGTCTTTCATAAGAAGGCCAAAACCACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCAC
GTCTCACAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG
Protein sequenceShow/hide protein sequence
MTAVKYWACNGPWAKVIRNRAHNRPPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKH
VSQHPIKRCKHFEIGGDKKGKGTSLF