CuGenDBv2

Gene ID	HG10023219
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Genome location	Chr05:32308279..32311556
RNA-Seq Expression	HG10023219
Synteny	HG10023219
Gene Ontology terms	NA
InterPro domains	IPR018962 - Domain of unknown function DUF1995 IPR044687 - Protein LOW PSII ACCUMULATION 3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0058708.1 protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa]

5.6e-73

60.07

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQEKRGT+SCIVFPDKPEKRRAS+LFKTA+DSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NA    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

XP_004135877.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus]

1.4e-71

59.71

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----
        NIS Y KGSSD+FIDANIQLALAVARNLQEKRG +SCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG VTSFFRSVRNTLDFDFED+N     
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----

Query:  --------------------------------------------------------------------------------------------------AG
                                                                                                          AG
Subjt:  --------------------------------------------------------------------------------------------------AG

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

XP_008461181.1 PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis melo]

5.6e-73

60.07

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQEKRGT+SCIVFPDKPEKRRAS+LFKTA+DSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NA    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

XP_022149990.1 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Momordica charantia]

1.6e-72

59.71

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQE RGT+SCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQ+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSE+SSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

XP_038900014.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida]

1.5e-73

60.81

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQEKRGT+SCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN+    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KA03 DUF1995 domain-containing protein

6.7e-72

59.71

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----
        NIS Y KGSSD+FIDANIQLALAVARNLQEKRG +SCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG VTSFFRSVRNTLDFDFED+N     
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----

Query:  --------------------------------------------------------------------------------------------------AG
                                                                                                          AG
Subjt:  --------------------------------------------------------------------------------------------------AG

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

A0A1S3CFB8 protein LOW PSII ACCUMULATION 3, chloroplastic

2.7e-73

60.07

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQEKRGT+SCIVFPDKPEKRRAS+LFKTA+DSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NA    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

A0A5A7UU42 Protein LOW PSII ACCUMULATION 3

2.7e-73

60.07

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQEKRGT+SCIVFPDKPEKRRAS+LFKTA+DSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NA    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

A0A6J1D790 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1

7.9e-73

59.71

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQE RGT+SCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQ+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSE+SSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

A0A6J1GQW6 protein LOW PSII ACCUMULATION 3, chloroplastic

1.1e-71

58.97

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----
        NIS Y KGSSDEFIDANIQLALAVARNLQEKRGT+SCIVFPDKP+K RASQLFKTALDSIDGIT+SSLDDVPAGPVTSFFRS+RNTLDFDFEDENA    
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENA----

Query:  ---------------------------------------------------------------------------------------------------G
                                                                                                           G
Subjt:  ---------------------------------------------------------------------------------------------------G

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSEVSSAWRS
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

SwissProt top hits

e value

%identity

Alignment

Q8H0W0 Protein LPA3

4.1e-58

47.62

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----
        +IS Y KGSSD+FIDANIQLA+ V R LQEK  T++CIVFPDKPEKRRASQ FK A DS+DGI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN     
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----

Query:  --------------------------------------------------------------------------------------------------AG
                                                                                                           G
Subjt:  --------------------------------------------------------------------------------------------------AG

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQ+D S+ACVAES TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

Arabidopsis top hits

e value

%identity

Alignment

AT1G73060.1 Low PSII Accumulation 3

2.9e-59

47.62

Show/hide

Query:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----
        +IS Y KGSSD+FIDANIQLA+ V R LQEK  T++CIVFPDKPEKRRASQ FK A DS+DGI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN     
Subjt:  NISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN-----

Query:  --------------------------------------------------------------------------------------------------AG
                                                                                                           G
Subjt:  --------------------------------------------------------------------------------------------------AG

Query:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
        PWQVMLKQ+D S+ACVAES TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Subjt:  PWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTCATTTCATTTGAGAATATTTCTAAATATGTCAAGGGGTCTTCAGATGAGTTCATTGATGCAAATATTCAACTGGCCCTGGCTGTTGCAAGGAATCTCCAAGAAAA
GAGAGGAACTAAATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGCAGAGCTTCACAGTTGTTCAAAACAGCTCTTGACTCGATTGATGGAATAACTGTAAGTTCCC
TGGATGATGTTCCTGCTGGACCTGTCACATCTTTCTTCAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGACCTTGGCAAGTGATGCTAAAA
CAATCAGATAATTCTTATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAG
CTCACTTGAATTTCTCCGTAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATGTTGACTCTGAAGTATCTTCGGCATGGCGTAGTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MFISFENISKYVKGSSDEFIDANIQLALAVARNLQEKRGTKSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGPWQVMLK
QSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

HG10023219 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome