CuGenDBv2

Gene ID	HG10023220
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Genome location	Chr05:32312745..32313092
RNA-Seq Expression	HG10023220
Synteny	HG10023220
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575630.1 Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

8.0e-52

93.04

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRP HSNF+FSPISSSFS LRRSTRSS FGAQTL+TSGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

KAG7014184.1 Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.0e-51

92.17

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRP H NF+FSPISSSFS LRRSTRSS FGAQTL+TSGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

XP_022954402.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]

2.1e-52

93.04

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNF+FSPI+SSFS LRRSTRSS FGAQTL+TSGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

XP_022992481.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]

9.4e-53

93.91

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNF+FSPISSSFS LRRSTRSS FGAQTL+TSGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

XP_023547388.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo]

9.4e-53

93.91

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNF+FSPISSSFS LRRSTRSS FGAQTL+TSGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KA03 DUF1995 domain-containing protein

9.8e-48

88.7

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSL  PFH+NF+FSPISSS   LRRSTRSS FGAQTL+ SGFCFRIHC DKERAAPVTQ SDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

A0A1S3CFB8 protein LOW PSII ACCUMULATION 3, chloroplastic

4.9e-47

87.83

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        M IMAF+SSPP+IPSL RPF SNF+FSPISSS   LRRST SS FGAQTL+ SGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

A0A5A7UU42 Protein LOW PSII ACCUMULATION 3

3.4e-48

89.57

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        M IMAFLSSPP+IPSL RPFHSNF+FSPISSS   LRRST SS FGAQTL+ SGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

A0A6J1GQW6 protein LOW PSII ACCUMULATION 3, chloroplastic

1.0e-52

93.04

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Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNF+FSPI+SSFS LRRSTRSS FGAQTL+TSGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

A0A6J1JTN7 protein LOW PSII ACCUMULATION 3, chloroplastic

4.5e-53

93.91

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNF+FSPISSSFS LRRSTRSS FGAQTL+TSGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKIRLEIDFP
        YALEDGK+RLEIDFP
Subjt:  YALEDGKIRLEIDFP

SwissProt top hits

e value

%identity

Alignment

Q8H0W0 Protein LPA3

2.2e-12

71.11

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Query:  TQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRLEIDFP
        + +SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K RLEIDFP
Subjt:  TQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRLEIDFP

Arabidopsis top hits

e value

%identity

Alignment

AT1G73060.1 Low PSII Accumulation 3

1.6e-13

71.11

Show/hide

Query:  TQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRLEIDFP
        + +SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K RLEIDFP
Subjt:  TQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRLEIDFP

Sequences

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CDS sequence

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ATGGCAATCATGGCGTTTCTCTCTTCACCGCCGCACATTCCCTCTCTGGTTCGACCGTTTCACAGCAACTTTGTCTTCTCTCCCATTTCCTCTTCCTTCAGTGTACTACG
GCGTTCTACACGATCCAGCTCATTTGGCGCTCAAACTTTGTCGACTTCGGGATTTTGCTTTAGGATACACTGTCGTGACAAAGAAAGAGCTGCACCGGTTACTCAGAGCT
CCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCCAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGACGGAAAGATCCGCTTG
GAGATTGATTTCCCGTAA

mRNA sequence

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Protein sequence

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MAIMAFLSSPPHIPSLVRPFHSNFVFSPISSSFSVLRRSTRSSSFGAQTLSTSGFCFRIHCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRL
EIDFP

HG10023220 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome