; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10023284 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023284
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionZinc finger CCCH domain-containing protein 39-like
Genome locationChr05:32734985..32736341
RNA-Seq ExpressionHG10023284
SyntenyHG10023284
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR036855 - Zinc finger, CCCH-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135841.1 zinc finger CCCH domain-containing protein 39 isoform X1 [Cucumis sativus]1.8e-10772.54Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT
        MSAPNRFV EA G+WP LP PYPDPR QSFY+PTMS  VS+W M SNFGIPPW+N NIGY+HE GR YTPGFNDT R LPSG GIEF EGQLSER NV  
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT

Query:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALIS--------------
        SNEMKVC+ FQRR+KCAYGDQCRFLHEIP+++RD GSSSQNYEV T+A GHVMDR SGFDQLEEVRSKVQTK+VV GEIP+P +                
Subjt:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALIS--------------

Query:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
          A   F   + ELQKLEPC+ASQRGSV   S + TT+AA EAGLRSSR I TDCKNKGPR+NQFFESKESKKLIGIYADWLED
Subjt:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

XP_008461087.1 PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo]4.4e-10170.77Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT
        MSAPNRFV EA G+WP LP PYPDPR QSFY+ TMS  VS+W M SNFGIPPW+N NIGY+HELGR Y PGFNDTHR LPS  GIEFHEGQLSER NV  
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT

Query:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL--------------IS
        SNEMKVC+ FQRR+KCAYGDQCRFLHEIPE++RD GSSSQNYEV          RRSGFDQLEEVRSKVQTK+VV GEIP+P +                
Subjt:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL--------------IS

Query:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
          A   F   + ELQKLEPCSASQRGSV   SA+ TT+A  EAGLRSS+ I TDCKNKGPR+NQFFESKESKKLIGIYADWLED
Subjt:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

XP_011659534.1 uncharacterized protein LOC101205166 isoform X2 [Cucumis sativus]1.0e-7878.26Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT
        MSAPNRFV EA G+WP LP PYPDPR QSFY+PTMS  VS+W M SNFGIPPW+N NIGY+HE GR YTPGFNDT R LPSG GIEF EGQLSER NV  
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT

Query:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL
        SNEMKVC+ FQRR+KCAYGDQCRFLHEIP+++RD GSSSQNYEV T+A GHVMDR SGFDQLEEVRSKVQTK+VV GEIP+P +
Subjt:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL

XP_038897168.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida]8.5e-11376.04Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHE--LGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNV
        MSAPNRFV EA GDW PLP PYPD RLQSF+QPTMSETVS+WGM SN  IPPW+NRN+GYDHE  LGRLYTPGFNDTHRRLPS  GIEFHEGQLSERS V
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHE--LGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNV

Query:  T----TSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALISII------
             TSNEMKVC+QFQRRRKCAYGDQCRFLHEIPE++R+FGSSSQNYEVR +ASGHV+DRRSGFDQLEEVRSKVQTKIVV GEIP+P +          
Subjt:  T----TSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALISII------

Query:  --------AIVFFVLEKIELQKLEPCSASQRGSVSSASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
                A   F   + ELQK EPCSA+QRGSV  AS TTS   EAGLRSS GI TDCKNKGPRMNQFFESKESKKLIGIYADWLED
Subjt:  --------AIVFFVLEKIELQKLEPCSASQRGSVSSASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

XP_038897171.1 zinc finger CCCH domain-containing protein 12-like isoform X2 [Benincasa hispida]7.0e-8382.63Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHE--LGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNV
        MSAPNRFV EA GDW PLP PYPD RLQSF+QPTMSETVS+WGM SN  IPPW+NRN+GYDHE  LGRLYTPGFNDTHRRLPS  GIEFHEGQLSERS V
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHE--LGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNV

Query:  T----TSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL
             TSNEMKVC+QFQRRRKCAYGDQCRFLHEIPE++R+FGSSSQNYEVR +ASGHV+DRRSGFDQLEEVRSKVQTKIVV GEIP+P +
Subjt:  T----TSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL

TrEMBL top hitse value%identityAlignment
A0A0A0KBW4 Uncharacterized protein8.8e-10872.54Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT
        MSAPNRFV EA G+WP LP PYPDPR QSFY+PTMS  VS+W M SNFGIPPW+N NIGY+HE GR YTPGFNDT R LPSG GIEF EGQLSER NV  
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT

Query:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALIS--------------
        SNEMKVC+ FQRR+KCAYGDQCRFLHEIP+++RD GSSSQNYEV T+A GHVMDR SGFDQLEEVRSKVQTK+VV GEIP+P +                
Subjt:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALIS--------------

Query:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
          A   F   + ELQKLEPC+ASQRGSV   S + TT+AA EAGLRSSR I TDCKNKGPR+NQFFESKESKKLIGIYADWLED
Subjt:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

A0A1S4E329 zinc finger CCCH domain-containing protein 39-like2.1e-10170.77Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT
        MSAPNRFV EA G+WP LP PYPDPR QSFY+ TMS  VS+W M SNFGIPPW+N NIGY+HELGR Y PGFNDTHR LPS  GIEFHEGQLSER NV  
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT

Query:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL--------------IS
        SNEMKVC+ FQRR+KCAYGDQCRFLHEIPE++RD GSSSQNYEV          RRSGFDQLEEVRSKVQTK+VV GEIP+P +                
Subjt:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL--------------IS

Query:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
          A   F   + ELQKLEPCSASQRGSV   SA+ TT+A  EAGLRSS+ I TDCKNKGPR+NQFFESKESKKLIGIYADWLED
Subjt:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

A0A5A7UUP3 Zinc finger CCCH domain-containing protein 39-like2.1e-10170.77Show/hide
Query:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT
        MSAPNRFV EA G+WP LP PYPDPR QSFY+ TMS  VS+W M SNFGIPPW+N NIGY+HELGR Y PGFNDTHR LPS  GIEFHEGQLSER NV  
Subjt:  MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTT

Query:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL--------------IS
        SNEMKVC+ FQRR+KCAYGDQCRFLHEIPE++RD GSSSQNYEV          RRSGFDQLEEVRSKVQTK+VV GEIP+P +                
Subjt:  SNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPAL--------------IS

Query:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
          A   F   + ELQKLEPCSASQRGSV   SA+ TT+A  EAGLRSS+ I TDCKNKGPR+NQFFESKESKKLIGIYADWLED
Subjt:  IIAIVFFVLEKIELQKLEPCSASQRGSVS--SASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

A0A6J1GP84 zinc finger CCCH domain-containing protein 39-like isoform X14.6e-7265.27Show/hide
Query:  MRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTTSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYE
        M S   IPP +NRNIGYDHELG + TP  NDTHRRLPS  GI FHEGQLS R     SNEMKVC+QFQRRRKCAYGDQCR+LHE PE++R FGSS+QNYE
Subjt:  MRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTTSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYE

Query:  VRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRP--------------ALISIIAIVFFVLEKIELQKLEPCSASQRGSVSSASPTTSAAAEAGL
        VR + SGHVMDRR G DQLEEVRSKVQT+IVV GEIP+P                 S  A+  F  E+ ELQKLEP  ASQRGSVS AS TTSAA +A  
Subjt:  VRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRP--------------ALISIIAIVFFVLEKIELQKLEPCSASQRGSVSSASPTTSAAAEAGL

Query:  RSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
             I T CKN+ PRM QFF+SK+SK+LI IYADWLED
Subjt:  RSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

A0A6J1JNJ8 zinc finger CCCH domain-containing protein 39-like isoform X12.1e-7258.13Show/hide
Query:  MSAPNRF------VLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSE
        MSA  RF      V EA GD   LP P+ D  LQ    P+ S             IPP +NRNIGYDHELG + TP  NDTHRRLPS  GIEFHEGQLS 
Subjt:  MSAPNRF------VLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSE

Query:  RSNVTTSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALISII------
        R     SNEMK C+QFQRRRKCAYGDQCR+LHEIPE++RDFGS++QNYEVR + SGHVM+RR G DQLEEVRSKVQT+IVV GEIP+P            
Subjt:  RSNVTTSNEMKVCKQFQRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALISII------

Query:  --------AIVFFVLEKIELQKLEP-CSASQRGSVSSASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED
                A+     E+ ELQKL P  +ASQRGSVS AS TTSAA +  +    GI   CKN+ PRM QFF+SK+SK+LI IYADWLED
Subjt:  --------AIVFFVLEKIELQKLEP-CSASQRGSVSSASPTTSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCTCCTAATCGGTTTGTCCTTGAGGCTCCTGGCGATTGGCCGCCATTGCCTGCTCCATATCCTGATCCTAGACTCCAATCATTCTATCAGCCTACGATGTCCGA
AACTGTTTCTACTTGGGGAATGCGTTCAAATTTTGGGATTCCACCATGGAGCAATCGGAACATTGGGTATGACCATGAGTTGGGGCGTTTGTATACACCTGGTTTTAATG
ATACTCACAGAAGGTTACCTTCCGGACTAGGAATTGAATTCCATGAAGGTCAATTGTCAGAGCGTTCGAATGTTACTACCTCGAATGAAATGAAAGTCTGCAAACAGTTC
CAACGACGGAGGAAATGTGCATATGGGGATCAGTGTCGTTTCCTTCATGAAATTCCTGAGAGAAGTAGGGATTTTGGCTCCTCCAGCCAAAATTATGAGGTTAGAACAAT
AGCTTCTGGTCATGTTATGGATCGAAGAAGCGGGTTTGATCAATTGGAAGAAGTCAGATCAAAAGTACAAACGAAGATCGTTGTCCACGGTGAGATTCCAAGGCCTGCAT
TGATATCAATTATTGCCATTGTCTTCTTTGTTTTGGAGAAAATAGAACTACAGAAGCTTGAGCCATGCAGTGCATCACAACGTGGGAGCGTAAGTAGTGCCTCTCCAACA
ACATCTGCTGCTGCCGAAGCTGGATTAAGAAGCAGCAGAGGAATCGCAACCGACTGTAAGAATAAAGGGCCAAGAATGAACCAATTCTTTGAATCAAAGGAGTCTAAGAA
GTTGATTGGCATTTATGCCGACTGGCTTGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCTCCTAATCGGTTTGTCCTTGAGGCTCCTGGCGATTGGCCGCCATTGCCTGCTCCATATCCTGATCCTAGACTCCAATCATTCTATCAGCCTACGATGTCCGA
AACTGTTTCTACTTGGGGAATGCGTTCAAATTTTGGGATTCCACCATGGAGCAATCGGAACATTGGGTATGACCATGAGTTGGGGCGTTTGTATACACCTGGTTTTAATG
ATACTCACAGAAGGTTACCTTCCGGACTAGGAATTGAATTCCATGAAGGTCAATTGTCAGAGCGTTCGAATGTTACTACCTCGAATGAAATGAAAGTCTGCAAACAGTTC
CAACGACGGAGGAAATGTGCATATGGGGATCAGTGTCGTTTCCTTCATGAAATTCCTGAGAGAAGTAGGGATTTTGGCTCCTCCAGCCAAAATTATGAGGTTAGAACAAT
AGCTTCTGGTCATGTTATGGATCGAAGAAGCGGGTTTGATCAATTGGAAGAAGTCAGATCAAAAGTACAAACGAAGATCGTTGTCCACGGTGAGATTCCAAGGCCTGCAT
TGATATCAATTATTGCCATTGTCTTCTTTGTTTTGGAGAAAATAGAACTACAGAAGCTTGAGCCATGCAGTGCATCACAACGTGGGAGCGTAAGTAGTGCCTCTCCAACA
ACATCTGCTGCTGCCGAAGCTGGATTAAGAAGCAGCAGAGGAATCGCAACCGACTGTAAGAATAAAGGGCCAAGAATGAACCAATTCTTTGAATCAAAGGAGTCTAAGAA
GTTGATTGGCATTTATGCCGACTGGCTTGAAGATTGA
Protein sequenceShow/hide protein sequence
MSAPNRFVLEAPGDWPPLPAPYPDPRLQSFYQPTMSETVSTWGMRSNFGIPPWSNRNIGYDHELGRLYTPGFNDTHRRLPSGLGIEFHEGQLSERSNVTTSNEMKVCKQF
QRRRKCAYGDQCRFLHEIPERSRDFGSSSQNYEVRTIASGHVMDRRSGFDQLEEVRSKVQTKIVVHGEIPRPALISIIAIVFFVLEKIELQKLEPCSASQRGSVSSASPT
TSAAAEAGLRSSRGIATDCKNKGPRMNQFFESKESKKLIGIYADWLED