; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10023344 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023344
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPyridoxal 5'-phosphate synthase subunit PdxS
Genome locationChr05:33247350..33247825
RNA-Seq ExpressionHG10023344
SyntenyHG10023344
Gene Ontology termsGO:0006520 - cellular amino acid metabolic process (biological process)
GO:0008615 - pyridoxine biosynthetic process (biological process)
GO:0042823 - pyridoxal phosphate biosynthetic process (biological process)
GO:0016843 - amine-lyase activity (molecular function)
InterPro domainsIPR001852 - Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ
IPR013785 - Aldolase-type TIM barrel
IPR033755 - PdxS/SNZ N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059296.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis melo var. makuwa]2.1e-4363.4Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        KFK+SYFVCG  SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHNM++DE                              AGGI 
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF
        TPADAALMMQLGCDGIFL LEIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF

XP_004141845.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis sativus]7.3e-4462.03Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        KFK+S+FVCGC SLGEALRRIKEGA MVKT+G M+S +G+I E LRNVRSVM++IRYLHNM+++E                              AGGI 
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        TPADAALMMQLGCDGIFL LEIF+ PNPRDRLR MI AVRN++DP  LA+A+FGFG A
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

XP_022145699.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Momordica charantia]2.5e-4461.39Show/hide
Query:  FKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        F E+YFVCGC SLGEALRR+KEGA MVKT+G + +S+ G+I E  RNVRSVM EIR LHNM+DDE                              AGGI+
Subjt:  FKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        TPADA LMMQLGCDGIF+ LEIFDC NPRDRLR M++AV+NYNDP++LA+ASFGFGAA
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

XP_038897062.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X1 [Benincasa hispida]1.1e-5070.25Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        KFK+SYFVCGC +LGEALRRIKEGAAMVKT+GDM+SSSGNIAE LRNVRSVM EIRYLHNMNDDE                              AGGI 
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        TPADAALMMQLGCDGIFL  EIFD PN RDRLRGMI AVRNYN+P VLA+ SFGFGAA
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

XP_038897063.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X2 [Benincasa hispida]1.2e-4669.33Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        KFK+SYFVCGC +LGEALRRIKEGAAMVKT+GDM+SSSGNIAE LRNVRSVM EIRYLHNMNDDE                              AGGI 
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQ
        TPADAALMMQLGCDGIFL  EIFD PN RDRLRGMI AVRNYN+P VLA+
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQ

TrEMBL top hitse value%identityAlignment
A0A0A0K936 SOR_SNZ domain-containing protein3.5e-4462.03Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        KFK+S+FVCGC SLGEALRRIKEGA MVKT+G M+S +G+I E LRNVRSVM++IRYLHNM+++E                              AGGI 
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        TPADAALMMQLGCDGIFL LEIF+ PNPRDRLR MI AVRN++DP  LA+A+FGFG A
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

A0A1S3CH05 pyridoxal 5'-phosphate synthase-like subunit PDX1.21.3e-4363.4Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        KFK+SYFVCG  SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHNM++DE                              AGGI 
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF
        TPADAALMMQLGCDGIFL LEIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF

A0A5D3BYT2 Pyridoxal 5'-phosphate synthase-like subunit PDX1.21.0e-4363.4Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        KFK+SYFVCG  SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHNM++DE                              AGGI 
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF
        TPADAALMMQLGCDGIFL LEIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF

A0A6J1CW07 pyridoxal 5'-phosphate synthase-like subunit PDX1.21.2e-4461.39Show/hide
Query:  FKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA
        F E+YFVCGC SLGEALRR+KEGA MVKT+G + +S+ G+I E  RNVRSVM EIR LHNM+DDE                              AGGI+
Subjt:  FKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIA

Query:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        TPADA LMMQLGCDGIF+ LEIFDC NPRDRLR M++AV+NYNDP++LA+ASFGFGAA
Subjt:  TPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

A0A6J1KI63 pyridoxal 5'-phosphate synthase-like subunit PDX1.26.7e-4361.64Show/hide
Query:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMT--SSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGG
        +FKESYFVCGC SLGEALRR+KEGA M+KT+GDM   SS  NI E LRNVRSVMA+IR+LH+MN+DE                              AGG
Subjt:  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMT--SSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGG

Query:  IATPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGA
        IATPADAALMMQLGCDGIF+ LEIF    P DRLRG++ AV+ YNDP VLAQASFG GA
Subjt:  IATPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGA

SwissProt top hitse value%identityAlignment
A9WFT9 Pyridoxal 5'-phosphate synthase subunit PdxS1.5e-2845.39Show/hide
Query:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA
        FVCGC +LGEALRR+ EGAAM++T+G+  + +GN+ EA+R+ R+V +EIR L +MN+DE                              AGGIATPADAA
Subjt:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA

Query:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        L+MQLG DGIF+   IF   +P  R R ++ A  +YNDP ++A+ S G G A
Subjt:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

B8G663 Pyridoxal 5'-phosphate synthase subunit PdxS3.1e-2946.71Show/hide
Query:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA
        FVCGC +LGEALRRI EGAAM++T+G+  + +GN+ EA+R+ R+V +EIR L +MN+DE                              AGGIATPADAA
Subjt:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA

Query:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        L+MQLG DGIF+   IF   NP  R R ++ A  +YNDP ++A+ S G G A
Subjt:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Q39963 Probable pyridoxal 5'-phosphate synthase subunit PDX16.7e-3248.03Show/hide
Query:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA
        FVCGC +LGEALRRI+EGAAM++T+G+  + +GN+ EA+R+VRSVM +IR L NM+DDE                              AGG+ATPADAA
Subjt:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA

Query:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        LMMQLGCDG+F+   +F   +P  R R ++ AV +Y+DP +LA+ S G G A
Subjt:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Q9AT63 Probable pyridoxal 5'-phosphate synthase subunit PDX12.5e-3146.71Show/hide
Query:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA
        FVCGC +LGEALRRI EGAAM++T+G+  + +GN+ EA+R+VRSV+ +IR L +++DDE                              AGG+ATPADAA
Subjt:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA

Query:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        LMMQLGCDG+F+   +F   +P  R R ++ AV +YNDPH+LA+ S   G A
Subjt:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Q9ZNR6 Pyridoxal 5'-phosphate synthase-like subunit PDX1.22.2e-3550.67Show/hide
Query:  SYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPAD
        S F+CGC   GEALRRI+EGAAM++ +GD+T ++GNIAE ++NVRS+M E+R L+NM+DDE                              +GGI TPAD
Subjt:  SYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPAD

Query:  AALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG
        AALMMQLGCDG+F+  E+FD P+P  +LR ++ AV++YNDPHVLA+ S G
Subjt:  AALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG

Arabidopsis top hitse value%identityAlignment
AT2G38230.1 pyridoxine biosynthesis 1.19.9e-3146.71Show/hide
Query:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA
        FVCGC +LGEALRRI+EGAAM++T+G+  + +GN+ EA+R+VRSV   IR L +M+DDE                              AGG+ATPADAA
Subjt:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA

Query:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        LMMQLGCDG+F+   +F   +P  R + ++ AV NY D  VLA+ S G G A
Subjt:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

AT3G16050.1 pyridoxine biosynthesis 1.21.6e-3650.67Show/hide
Query:  SYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPAD
        S F+CGC   GEALRRI+EGAAM++ +GD+T ++GNIAE ++NVRS+M E+R L+NM+DDE                              +GGI TPAD
Subjt:  SYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPAD

Query:  AALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG
        AALMMQLGCDG+F+  E+FD P+P  +LR ++ AV++YNDPHVLA+ S G
Subjt:  AALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG

AT5G01410.1 Aldolase-type TIM barrel family protein4.0e-3248.03Show/hide
Query:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA
        FVCGC +LGEALRRI+EGAAM++T+G+  + +GNI EA+R+VRSV  +IR L NM+DDE                              AGG+ATPADAA
Subjt:  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE-----------------------------TAGGIATPADAA

Query:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        LMMQLGCDG+F+   IF   +P  R R ++ AV +Y+DP +L + S G G A
Subjt:  LMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGAATTTTATCGATAAGCACTAAGTTTAAGGAGTCGTATTTCGTCTGTGGATGTGGAAGCCTAGGCGAGGCGTTGAGGAGAATAAAGGAAGGTGCGGCAATGGT
GAAGACTCGAGGGGATATGACGTCTTCTTCAGGTAACATTGCGGAGGCGTTGCGTAACGTGAGGTCTGTGATGGCAGAGATTAGATATTTACATAACATGAATGACGATG
AGACTGCCGGAGGCATTGCGACTCCTGCGGATGCGGCTTTGATGATGCAGTTAGGTTGTGATGGCATCTTTCTGGAATTGGAGATATTCGACTGCCCTAATCCTCGCGAC
CGATTAAGGGGAATGATTATAGCGGTGAGGAATTACAACGATCCCCACGTTCTGGCGCAGGCTAGTTTTGGATTTGGCGCCGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCAGAATTTTATCGATAAGCACTAAGTTTAAGGAGTCGTATTTCGTCTGTGGATGTGGAAGCCTAGGCGAGGCGTTGAGGAGAATAAAGGAAGGTGCGGCAATGGT
GAAGACTCGAGGGGATATGACGTCTTCTTCAGGTAACATTGCGGAGGCGTTGCGTAACGTGAGGTCTGTGATGGCAGAGATTAGATATTTACATAACATGAATGACGATG
AGACTGCCGGAGGCATTGCGACTCCTGCGGATGCGGCTTTGATGATGCAGTTAGGTTGTGATGGCATCTTTCTGGAATTGGAGATATTCGACTGCCCTAATCCTCGCGAC
CGATTAAGGGGAATGATTATAGCGGTGAGGAATTACAACGATCCCCACGTTCTGGCGCAGGCTAGTTTTGGATTTGGCGCCGCATGA
Protein sequenceShow/hide protein sequence
MTRILSISTKFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDETAGGIATPADAALMMQLGCDGIFLELEIFDCPNPRD
RLRGMIIAVRNYNDPHVLAQASFGFGAA