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HG10023352 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023352
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDynein light chain
Genome locationChr05:33294516..33294992
RNA-Seq ExpressionHG10023352
SyntenyHG10023352
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462164.1 PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis melo]1.9e-4697.92Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

XP_011659570.1 dynein light chain LC6, flagellar outer arm [Cucumis sativus]5.4e-4696.88Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS P
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

XP_022964212.1 dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]1.9e-4395.74Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

XP_023513963.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita pepo subsp. pepo]4.3e-4395.74Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

XP_038897874.1 dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]1.1e-4697.92Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKAL+QDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

TrEMBL top hitse value%identityAlignment
A0A0A0K947 Dynein light chain2.6e-4696.88Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS P
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

A0A1S3CGU5 Dynein light chain9.1e-4797.92Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

A0A5A7UW48 Dynein light chain9.1e-4797.92Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

A0A6J1HH84 Dynein light chain9.4e-4495.74Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

A0A6J1KDK4 Dynein light chain9.4e-4495.74Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm1.8e-1546.07Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M E KA++++ DMP  MQ  A+D A++AL+ +++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

P61285 Dynein light chain 1, cytoplasmic5.2e-1543.82Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

P63167 Dynein light chain 1, cytoplasmic5.2e-1543.82Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q22799 Dynein light chain 1, cytoplasmic5.2e-1544.94Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M++ KA++++ DM   MQ  A+D A++AL+ Y++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q24117 Dynein light chain 1, cytoplasmic5.2e-1544.94Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  A+D A++AL+ Y++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 119.0e-2379.66Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCV
        MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DVFDCKSIA HIKK+FD RYGSGWQCV
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.3e-4080.65Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTS
        MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DVFDCKSIA HIKK+FD RYGSGWQCVVGSNFGCFFTHSKG+FIYF+LETL FLIFKG ++
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTS

AT3G16120.1 Dynein light chain type 1 family protein4.5e-3879.35Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVT
        MLEGKA V++TDMP KMQ+QAM  AS++LDL+DVFD  SIAAHIKK+FD RYGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFKG T
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVT

AT4G27360.1 Dynein light chain type 1 family protein5.3e-2355.56Show/hide
Query:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKA++ DTDM   M+  A+  ASKALD +DV +   IA  IKK+FD  YGSGWQC+VG++FG F TH  G FI+F + +L  L+FKG
Subjt:  MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

AT5G20110.1 Dynein light chain type 1 family protein6.3e-1648.72Show/hide
Query:  DMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        DMP  MQ  A   A   LD  + F  K +A ++KK+FD  YG  W C+VGS+FG F THS G FIYF ++ L  L+FK
Subjt:  DMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGCAAAGCTTTGGTACAGGACACAGATATGCCTGCCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTTTCGACTG
CAAATCCATTGCTGCCCACATAAAAAAGGATTTTGACAACAGATATGGAAGCGGATGGCAATGTGTGGTTGGTTCAAATTTTGGTTGTTTCTTCACCCACTCCAAGGGGT
CTTTCATCTACTTCAAACTGGAGACCCTTAACTTTCTCATCTTCAAAGGGGTGACTTCTTCGGCCCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAGGCAAAGCTTTGGTACAGGACACAGATATGCCTGCCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTTTCGACTG
CAAATCCATTGCTGCCCACATAAAAAAGGATTTTGACAACAGATATGGAAGCGGATGGCAATGTGTGGTTGGTTCAAATTTTGGTTGTTTCTTCACCCACTCCAAGGGGT
CTTTCATCTACTTCAAACTGGAGACCCTTAACTTTCTCATCTTCAAAGGGGTGACTTCTTCGGCCCCATGA
Protein sequenceShow/hide protein sequence
MLEGKALVQDTDMPAKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP