; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10023357 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023357
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationChr05:33315741..33316232
RNA-Seq ExpressionHG10023357
SyntenyHG10023357
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059310.1 30S ribosomal protein S17 [Cucumis melo var. makuwa]2.2e-7191.46Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQ LKKLSIS+SFLHGS PLSFLSK S SPSP A QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR+SKKKAAE G+  ELGIPLE QQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV

XP_004141765.1 30S ribosomal protein S17, chloroplastic [Cucumis sativus]2.0e-6989.02Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPP+Q LKKLSIS+SFLHGS PLSFLSKPS S SP   QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV
        YQAHDPDNQF+VGDFVELEKCRPISKMKTFLAIPVPAR+SKKKA E G+  ELGIPLE QQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV

XP_008462167.1 PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo]2.6e-7292.07Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQ LKKLSIS+SFLHGS PLSFLSKPS SPSP A QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR+SKKKAAE G+  ELGIPLE QQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]1.1e-6788.2Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSATL+ SS LQIPPLQRLK LS+STSFLHGS PLSFLSKPSPS S S  QTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQE
        YQAHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPAR+SK KAAE+G  ELGIPLE QQ+
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQE

XP_038898716.1 30S ribosomal protein S17, chloroplastic [Benincasa hispida]6.8e-7393.25Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSATLTSSSLLQIPPLQRLKKLSISTSFLHGS+PL F SK    PSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVP RSSKKKAAE GD ELGIPLE QQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQEQV

TrEMBL top hitse value%identityAlignment
A0A0A0K952 Uncharacterized protein9.9e-7089.02Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPP+Q LKKLSIS+SFLHGS PLSFLSKPS S SP   QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV
        YQAHDPDNQF+VGDFVELEKCRPISKMKTFLAIPVPAR+SKKKA E G+  ELGIPLE QQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV

A0A1S3CGC8 30S ribosomal protein S17, chloroplastic1.2e-7292.07Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQ LKKLSIS+SFLHGS PLSFLSKPS SPSP A QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR+SKKKAAE G+  ELGIPLE QQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV

A0A5A7UW29 30S ribosomal protein S17, chloroplastic1.1e-7191.46Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQ LKKLSIS+SFLHGS PLSFLSK S SPSP A QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR+SKKKAAE G+  ELGIPLE QQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGD-EELGIPLEFQQEQV

A0A6J1GQP3 30S ribosomal protein S17, chloroplastic-like6.6e-6686.79Show/hide
Query:  ATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        + L+ SS LQIPPLQRLK LSISTSFLHGS PLSFLSKPSPS S S  QTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  ATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQE
        AHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPAR+SK KAAE+G  ELGIPLE Q++
Subjt:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQE

A0A6J1JVM9 30S ribosomal protein S17, chloroplastic-like2.7e-6788.2Show/hide
Query:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSATL+ SS LQIPPLQRLK LS+STSFLHGS PLSFLSKPSPS S S  QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQE
        YQAHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPAR+SK KAAE+G  EL IPLE QQ+
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQE

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic1.8e-4466.9Show/hide
Query:  LKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
        L+ L +S+ F HGS PLS LSKP+  P+    + P  +P IRAM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V L
Subjt:  LKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL

Query:  EKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQ
        EK RPISK K+F+A+PV AR++ +KA   GDE LG+PLE QQ
Subjt:  EKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)2.2e-3461.42Show/hide
Query:  LSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIP
        L+  S P  SP           P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P
Subjt:  LSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIP

Query:  VPARSSKKKAAESGDEELGIPLEFQQE
         P+R S KKA  SG  ELGIPL+ QQE
Subjt:  VPARSSKKKAAESGDEELGIPLEFQQE

P82137 30S ribosomal protein S17, chloroplastic7.4e-3858.64Show/hide
Query:  SSSLLQIPPLQRLKKLSISTSFLHGSAP----LSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        S SLL+ PPL      S    FLHG+      L   S  S S SP +  T    P I+AMRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQ
Subjt:  SSSLLQIPPLQRLKKLSISTSFLHGSAP----LSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSS---KKKAAESGDEELGIPLEFQQE
        AHDPDNQFKVGD+V+L+KCRPISK KTFLA+    R S   + K  ++  +ELGIPLE Q E
Subjt:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSS---KKKAAESGDEELGIPLEFQQE

Q9TJN6 30S ribosomal protein S17, chloroplastic1.8e-2863.96Show/hide
Query:  LSKP--SPSPSPSAFQTPNFLPSIR--AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAI
        LS P  S SP P    +    P++R  A R L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FLAI
Subjt:  LSKP--SPSPSPSAFQTPNFLPSIR--AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAI

Query:  PVPARSSKKKA
        P+P R +++K+
Subjt:  PVPARSSKKKA

Q9ZST1 30S ribosomal protein S17, chloroplastic1.2e-2770.93Show/hide
Query:  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKA
        I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + RPISK K FLA+P+P R +++K+
Subjt:  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARSSKKKA

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S171.3e-4566.9Show/hide
Query:  LKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
        L+ L +S+ F HGS PLS LSKP+  P+    + P  +P IRAM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V L
Subjt:  LKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL

Query:  EKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQ
        EK RPISK K+F+A+PV AR++ +KA   GDE LG+PLE QQ
Subjt:  EKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGGCTGAAGAAGCTCTCAATTTCCACCTCTTTCCTCCATGGCTCAGCTCCTCTCTCATT
CCTCTCTAAGCCTTCGCCCTCGCCCTCGCCATCAGCCTTCCAAACCCCCAATTTCCTCCCCTCAATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTGGTCTGTGCCACCA
ACGACAAAACCGTCGCTGTGGAGGTCGTCCGATTAGCGCCTCATCCGAAATACAAGCGCCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTC
AAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGTCCCATCAGTAAGATGAAGACGTTCTTGGCTATTCCGGTTCCGGCGAGGAGTTCGAAGAAGAAAGCGGCGGAATC
CGGTGATGAAGAGCTTGGAATTCCACTGGAGTTTCAGCAAGAACAGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGGCTGAAGAAGCTCTCAATTTCCACCTCTTTCCTCCATGGCTCAGCTCCTCTCTCATT
CCTCTCTAAGCCTTCGCCCTCGCCCTCGCCATCAGCCTTCCAAACCCCCAATTTCCTCCCCTCAATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTGGTCTGTGCCACCA
ACGACAAAACCGTCGCTGTGGAGGTCGTCCGATTAGCGCCTCATCCGAAATACAAGCGCCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTC
AAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGTCCCATCAGTAAGATGAAGACGTTCTTGGCTATTCCGGTTCCGGCGAGGAGTTCGAAGAAGAAAGCGGCGGAATC
CGGTGATGAAGAGCTTGGAATTCCACTGGAGTTTCAGCAAGAACAGGTTTAA
Protein sequenceShow/hide protein sequence
MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSAPLSFLSKPSPSPSPSAFQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF
KVGDFVELEKCRPISKMKTFLAIPVPARSSKKKAAESGDEELGIPLEFQQEQV