; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10023452 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023452
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationChr05:34320961..34321464
RNA-Seq ExpressionHG10023452
SyntenyHG10023452
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF41012.1 conserved hypothetical protein [Ricinus communis]1.9e-1738.78Show/hide
Query:  ICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEG----DSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF
        I  G+ +  ++ IA + + + +LGW     H     E      H+     + N     T  YKK  E+ E  +E+EC++CLS +ED E++R+LP C H F
Subjt:  ICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEG----DSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF

Query:  HASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNS
        HASCID+W+YSHS+C LCRTP+         L SE   S V++I NS
Subjt:  HASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNS

KAA0059407.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa]5.2e-6074.55Show/hide
Query:  IFICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHA
        +FICSG+AI+CSLFIAL FFNL +LGWFNCCC SPE T+ VKNIK+E DSN++KI TI YKKEN+SEETN  SEC LCLSP EDGE IR+L  CNHVFHA
Subjt:  IFICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHA

Query:  SCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV
        SCID+WLYSHSNC LCRT +D+VAC NGEL S VVNS VV INNSLQI LS H SRR +  ENMV
Subjt:  SCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV

KAE8646506.1 hypothetical protein Csa_015876 [Cucumis sativus]1.4e-6077.71Show/hide
Query:  IFICSGIAIICSLFIALSFFNLT-ILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFH
        +FICSGIAIICSL IAL FFNLT ILGWFNCCC SPE T +VKNIK+E DSN+MKI TI YKKEN+SEETN  SEC LCLSPYEDGE IR L  CNHVFH
Subjt:  IFICSGIAIICSLFIALSFFNLT-ILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFH

Query:  ASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV
        ASCIDIWLYSHSNC LCRTP+  VACINGEL S V    VV+I+NSLQIE S HGS+REA PENMV
Subjt:  ASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV

KAG7013994.1 E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-6275.61Show/hide
Query:  FICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHAS
        FICSGIAIICSL I+L+FF+LTILGWFNCCCHSP TTESV+NIK+E  S++M+IPT+TYKKENE+EETNTESECVLCLSP+EDGE IR+LP+CNHVFHAS
Subjt:  FICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHAS

Query:  CIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV
        CID+WL SHS C LCRTPV +VAC      +E V  QVV I NSLQIELSPH  R +AWPENMV
Subjt:  CIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV

KDP40714.1 hypothetical protein JCGZ_24713 [Jatropha curcas]4.1e-1751.04Show/hide
Query:  TITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSP
        T  YKKE+E+ E   E+ECV+CLS +ED E++RRL  C H FHA CID+WLYSHS+C LCRTP+  +   +G L +E     +V  ++S   ELSP
Subjt:  TITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSP

TrEMBL top hitse value%identityAlignment
A0A067L9H5 RING-type E3 ubiquitin transferase2.0e-1751.04Show/hide
Query:  TITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSP
        T  YKKE+E+ E   E+ECV+CLS +ED E++RRL  C H FHA CID+WLYSHS+C LCRTP+  +   +G L +E     +V  ++S   ELSP
Subjt:  TITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSP

A0A0A0KAX6 RING-type E3 ubiquitin transferase6.6e-6177.71Show/hide
Query:  IFICSGIAIICSLFIALSFFNLT-ILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFH
        +FICSGIAIICSL IAL FFNLT ILGWFNCCC SPE T +VKNIK+E DSN+MKI TI YKKEN+SEETN  SEC LCLSPYEDGE IR L  CNHVFH
Subjt:  IFICSGIAIICSLFIALSFFNLT-ILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFH

Query:  ASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV
        ASCIDIWLYSHSNC LCRTP+  VACINGEL S V    VV+I+NSLQIE S HGS+REA PENMV
Subjt:  ASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV

A0A2N9J1M7 RING-type E3 ubiquitin transferase1.8e-2143.75Show/hide
Query:  GIAIICSLFIALSFFNLT--ILGWFNCCCHSPETTESVKNIKHEGDS-NVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASC
        GI +I S+ IAL F+NL   +L  +    H P T   VK    +    N + + T  YKK  E+ E  +E+ECV+CLS +ED E + RLP C H FH  C
Subjt:  GIAIICSLFIALSFFNLT--ILGWFNCCCHSPETTESVKNIKHEGDS-NVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASC

Query:  IDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSL
        ID+WLYSHS+C LCRTP+D ++  NG   S+  N+Q V +  S+
Subjt:  IDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSL

A0A5D3BXP3 RING-type E3 ubiquitin transferase2.5e-6074.55Show/hide
Query:  IFICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHA
        +FICSG+AI+CSLFIAL FFNL +LGWFNCCC SPE T+ VKNIK+E DSN++KI TI YKKEN+SEETN  SEC LCLSP EDGE IR+L  CNHVFHA
Subjt:  IFICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHA

Query:  SCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV
        SCID+WLYSHSNC LCRT +D+VAC NGEL S VVNS VV INNSLQI LS H SRR +  ENMV
Subjt:  SCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV

B9S5S5 RING-type E3 ubiquitin transferase9.0e-1838.78Show/hide
Query:  ICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEG----DSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF
        I  G+ +  ++ IA + + + +LGW     H     E      H+     + N     T  YKK  E+ E  +E+EC++CLS +ED E++R+LP C H F
Subjt:  ICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEG----DSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF

Query:  HASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNS
        HASCID+W+YSHS+C LCRTP+         L SE   S V++I NS
Subjt:  HASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNS

SwissProt top hitse value%identityAlignment
Q8L9T5 RING-H2 finger protein ATL21.3e-1339.83Show/hide
Query:  DSNVMK-IPTITYKKENESEETNTES-ECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACING-------ELISEVVNSQV
        D NV+K +P  T+     S+ET+ +  EC +CLS +E+ E  R LP C H FH  CID+W +SHS C LCR+ V+++A I         E++  V +  V
Subjt:  DSNVMK-IPTITYKKENESEETNTES-ECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACING-------ELISEVVNSQV

Query:  VSINNSLQIELS--PHGS
        + I  S    L+  PHGS
Subjt:  VSINNSLQIELS--PHGS

Q8W571 RING-H2 finger protein ATL322.9e-1334.17Show/hide
Query:  AIICSLFIALSFFNLTILGWFNCCCHSPE-TTESVKNIKHEGDSN--------VMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF
        A++ +LF      ++ I    +C   +P+ +T   +N  ++G S         V   P   Y    ES+  + + EC +CL+  ED E +R LP CNH+F
Subjt:  AIICSLFIALSFFNLTILGWFNCCCHSPE-TTESVKNIKHEGDSN--------VMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF

Query:  HASCIDIWLYSHSNCLLCRT
        H  CID WLYSH+ C +CR+
Subjt:  HASCIDIWLYSHSNCLLCRT

Q9LF64 RING-H2 finger protein ATL524.5e-1434.67Show/hide
Query:  IAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDS---------------NVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRL
        I I+ S  I +S++  T++  + C  H   ++    N+ H G+                N   I +IT  K    +     S+C +CLS +E+ E +R L
Subjt:  IAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDS---------------NVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRL

Query:  PTCNHVFHASCIDIWLYSHSNCLLCR---TPVDNVACINGELISEVVNSQ
        P CNH FH  CID WL SHSNC LCR   T V+N     G+ +S VV +Q
Subjt:  PTCNHVFHASCIDIWLYSHSNCLLCR---TPVDNVACINGELISEVVNSQ

Q9LUZ9 RING-H2 finger protein ATL636.9e-1540Show/hide
Query:  LGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVA
        LG F+    SP  T + ++ K    S +  IP   Y +ENE EE + E ECV+CL  +E G++ R+L  C H FH  CID+WL SHS C LCR+PV   A
Subjt:  LGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVA

Query:  CINGELISEVVNSQVVSINNSLQIELSPHG
          + E +   VN+  V     +++++SP G
Subjt:  CINGELISEVVNSQVVSINNSLQIELSPHG

Q9SRQ8 RING-H2 finger protein ATL515.8e-1441.3Show/hide
Query:  IPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSL
        I +IT  K  + +     S+C +CLS +++ E +R LP CNH FH  CID WL SHSNC LCR  +   + +    I ++ N Q+V+ NNS+
Subjt:  IPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSL

Arabidopsis top hitse value%identityAlignment
AT3G03550.1 RING/U-box superfamily protein4.1e-1541.3Show/hide
Query:  IPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSL
        I +IT  K  + +     S+C +CLS +++ E +R LP CNH FH  CID WL SHSNC LCR  +   + +    I ++ N Q+V+ NNS+
Subjt:  IPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSL

AT3G16720.1 TOXICOS EN LEVADURA 29.2e-1539.83Show/hide
Query:  DSNVMK-IPTITYKKENESEETNTES-ECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACING-------ELISEVVNSQV
        D NV+K +P  T+     S+ET+ +  EC +CLS +E+ E  R LP C H FH  CID+W +SHS C LCR+ V+++A I         E++  V +  V
Subjt:  DSNVMK-IPTITYKKENESEETNTES-ECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVACING-------ELISEVVNSQV

Query:  VSINNSLQIELS--PHGS
        + I  S    L+  PHGS
Subjt:  VSINNSLQIELS--PHGS

AT4G40070.1 RING/U-box superfamily protein2.1e-1434.17Show/hide
Query:  AIICSLFIALSFFNLTILGWFNCCCHSPE-TTESVKNIKHEGDSN--------VMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF
        A++ +LF      ++ I    +C   +P+ +T   +N  ++G S         V   P   Y    ES+  + + EC +CL+  ED E +R LP CNH+F
Subjt:  AIICSLFIALSFFNLTILGWFNCCCHSPE-TTESVKNIKHEGDSN--------VMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVF

Query:  HASCIDIWLYSHSNCLLCRT
        H  CID WLYSH+ C +CR+
Subjt:  HASCIDIWLYSHSNCLLCRT

AT5G17600.1 RING/U-box superfamily protein3.2e-1534.67Show/hide
Query:  IAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDS---------------NVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRL
        I I+ S  I +S++  T++  + C  H   ++    N+ H G+                N   I +IT  K    +     S+C +CLS +E+ E +R L
Subjt:  IAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDS---------------NVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRL

Query:  PTCNHVFHASCIDIWLYSHSNCLLCR---TPVDNVACINGELISEVVNSQ
        P CNH FH  CID WL SHSNC LCR   T V+N     G+ +S VV +Q
Subjt:  PTCNHVFHASCIDIWLYSHSNCLLCR---TPVDNVACINGELISEVVNSQ

AT5G58580.1 TOXICOS EN LEVADURA 634.9e-1640Show/hide
Query:  LGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVA
        LG F+    SP  T + ++ K    S +  IP   Y +ENE EE + E ECV+CL  +E G++ R+L  C H FH  CID+WL SHS C LCR+PV   A
Subjt:  LGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLYSHSNCLLCRTPVDNVA

Query:  CINGELISEVVNSQVVSINNSLQIELSPHG
          + E +   VN+  V     +++++SP G
Subjt:  CINGELISEVVNSQVVSINNSLQIELSPHG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATCTTCATCTGCTCTGGCATTGCCATTATTTGCTCGCTGTTTATAGCCCTCTCATTCTTCAATCTTACAATACTAGGATGGTTTAATTGCTGTTGCCATTCGCC
CGAGACAACTGAGTCAGTTAAGAATATTAAACATGAAGGAGACTCAAATGTCATGAAGATCCCAACTATCACGTACAAGAAAGAAAATGAGAGTGAAGAAACTAATACTG
AAAGTGAGTGTGTTTTGTGCTTGTCACCTTATGAAGATGGGGAATGGATACGGCGGCTTCCCACCTGCAACCATGTCTTTCATGCTTCATGTATCGACATATGGCTGTAT
TCACATTCAAACTGCCTGCTCTGCCGGACTCCAGTCGACAATGTAGCTTGTATCAATGGGGAGTTGATATCAGAGGTGGTGAATTCTCAGGTAGTATCCATTAATAACAG
TCTCCAAATTGAGCTTTCTCCTCATGGAAGTAGGAGGGAGGCGTGGCCTGAAAACATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATCTTCATCTGCTCTGGCATTGCCATTATTTGCTCGCTGTTTATAGCCCTCTCATTCTTCAATCTTACAATACTAGGATGGTTTAATTGCTGTTGCCATTCGCC
CGAGACAACTGAGTCAGTTAAGAATATTAAACATGAAGGAGACTCAAATGTCATGAAGATCCCAACTATCACGTACAAGAAAGAAAATGAGAGTGAAGAAACTAATACTG
AAAGTGAGTGTGTTTTGTGCTTGTCACCTTATGAAGATGGGGAATGGATACGGCGGCTTCCCACCTGCAACCATGTCTTTCATGCTTCATGTATCGACATATGGCTGTAT
TCACATTCAAACTGCCTGCTCTGCCGGACTCCAGTCGACAATGTAGCTTGTATCAATGGGGAGTTGATATCAGAGGTGGTGAATTCTCAGGTAGTATCCATTAATAACAG
TCTCCAAATTGAGCTTTCTCCTCATGGAAGTAGGAGGGAGGCGTGGCCTGAAAACATGGTTTAA
Protein sequenceShow/hide protein sequence
MSIFICSGIAIICSLFIALSFFNLTILGWFNCCCHSPETTESVKNIKHEGDSNVMKIPTITYKKENESEETNTESECVLCLSPYEDGEWIRRLPTCNHVFHASCIDIWLY
SHSNCLLCRTPVDNVACINGELISEVVNSQVVSINNSLQIELSPHGSRREAWPENMV