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HG10023457 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10023457
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPHD finger protein ALFIN-LIKE 3-like
Genome locationChr05:34380592..34381511
RNA-Seq ExpressionHG10023457
SyntenyHG10023457
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR021998 - Alfin, N-terminal
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575454.1 Phospholipid:diacylglycerol acyltransferase 1, partial [Cucurbita argyrosperma subsp. sororia]5.2e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
XP_004141692.1 PHD finger protein ALFIN-LIKE 3 [Cucumis sativus]5.2e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
XP_008462331.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo]5.2e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
XP_023548871.1 PHD finger protein ALFIN-LIKE 3-like [Cucurbita pepo subsp. pepo]5.2e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
XP_038897957.1 PHD finger protein ALFIN-LIKE 3-like [Benincasa hispida]5.2e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
TrEMBL top hitse value%identityAlignment
A0A0A0K9L1 PHD-type domain-containing protein2.5e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
A0A1S3CI87 PHD finger protein ALFIN-LIKE 3-like isoform X12.5e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
A0A5D3BXQ0 PHD finger protein ALFIN-LIKE 3-like isoform X22.5e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
A0A6J1GNM8 PHD finger protein ALFIN-LIKE 3-like2.5e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
A0A6J1JPM4 PHD finger protein ALFIN-LIKE 3-like2.5e-16100Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
SwissProt top hitse value%identityAlignment
B8ADZ3 PHD finger protein ALFIN-LIKE 75.8e-1069.05Show/hide
Query:  GGAVHN--RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        G AVH+  RS EDVF DFR RR G++KALT DVE+FY+QCDP
Subjt:  GGAVHN--RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
B8BJV8 PHD finger protein ALFIN-LIKE 86.9e-1174.42Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGA  +R+ EDVF DFR RR G+IKALT DVE+FYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Q2R837 PHD finger protein ALFIN-LIKE 86.9e-1174.42Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        MDGGGA  +R+ EDVF DFR RR G+IKALT DVE+FYQQCDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Q6Z7F4 PHD finger protein ALFIN-LIKE 75.8e-1069.05Show/hide
Query:  GGAVHN--RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        G AVH+  RS EDVF DFR RR G++KALT DVE+FY+QCDP
Subjt:  GGAVHN--RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Q9M2B4 PHD finger protein ALFIN-LIKE 33.1e-1165.91Show/hide
Query:  MDGGGAVHN-RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        M+GG A++N R+VE+VF DF+GRR  ++KALT DV+EFYQQCDP
Subjt:  MDGGGAVHN-RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
Arabidopsis top hitse value%identityAlignment
AT1G14510.1 alfin-like 76.0e-1073.53Show/hide
Query:  RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        R+VE+VFSDFRGRR G+IKAL+ DV++FY QCDP
Subjt:  RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
AT2G02470.1 alfin-like 63.9e-0973.53Show/hide
Query:  RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        R+VE+VFSDFRGRR G+IKALT D+ +FYQ CDP
Subjt:  RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
AT3G42790.1 alfin-like 32.2e-1265.91Show/hide
Query:  MDGGGAVHN-RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        M+GG A++N R+VE+VF DF+GRR  ++KALT DV+EFYQQCDP
Subjt:  MDGGGAVHN-RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
AT5G20510.1 alfin-like 51.2e-1063.64Show/hide
Query:  MDGGGAVHN-RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        M+GG A ++ R+VE+VF DF+GRR G+I+ALT DVE+F+QQCDP
Subjt:  MDGGGAVHN-RSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
AT5G26210.1 alfin-like 45.4e-1162.79Show/hide
Query:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP
        M+ GGA + R+VE+VF DF+GRR G+IKALT DV+EF++ CDP
Subjt:  MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGAAGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTT
CTATCAACAATGTGATCCTGGTACATACCTGTATCTCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGAAGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTT
CTATCAACAATGTGATCCTGGTACATACCTGTATCTCTTCTAA
Protein sequenceShow/hide protein sequence
MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPGTYLYLF