CuGenDBv2

Gene ID	HG10023462
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	Chr05:34442498..34446195
RNA-Seq Expression	HG10023462
Synteny	HG10023462
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059416.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa]

8.4e-219

90.21

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q+IQDEE KKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +K NLLISHVLVLTLF DEFSSDPADIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_004141689.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus]

2.6e-212

88.38

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M +DTKS+ELEENH     A+SQSPA KKKKSEK+KKRV S++AKIQVLSN PQKTPP+VGYFPSGFDPHKDAD+   E+  SVRARVYKHKN+PNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TK+DLD RMKNVVVNKEAL GT AE+ARNIP YNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q+IQDEE KKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +K NLLISHVLVL+LF DEFSSDPADIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_008462335.1 PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]

2.4e-218

89.98

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLE EENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q+IQDEE KKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +K NLLISHVLVLTLF DEFSSDPADIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

8.4e-211

86.33

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPDANSQSPA KKKKSEK+KKRVPSVNAKIQVLSNHPQKTPPLV YFPSGFDPHKDA+EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQ LKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQEKA+++RELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLH+LKQEDDPDTK DLD +MKNVVVNKEAL  T A+IARNIPTYN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q++QDEE KK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPTSE+RR+STE  NLLISHVLVLTLF DEFSSDP+DIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

8.7e-224

92.94

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENH AE D NS+SPA KKKKSEK+KKRVPSVNAKIQVL NHPQKTPP+VGYFPSGFDPHKDAD    EEQNSVRARVYKHKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADR+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDPDTK DLDVRMKNVVVN EAL GT AEIARNIPTYNASATTPQEAYPLDKIILKGEW+FLEDLYFRLQETAEISANYP FVR+RIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q+IQDEE KKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEK NLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLPIPLQFP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCN4 Uncharacterized protein

1.3e-212

88.38

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M +DTKS+ELEENH     A+SQSPA KKKKSEK+KKRV S++AKIQVLSN PQKTPP+VGYFPSGFDPHKDAD+   E+  SVRARVYKHKN+PNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TK+DLD RMKNVVVNKEAL GT AE+ARNIP YNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q+IQDEE KKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +K NLLISHVLVL+LF DEFSSDPADIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

1.2e-218

89.98

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLE EENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q+IQDEE KKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +K NLLISHVLVLTLF DEFSSDPADIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

4.1e-219

90.21

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q+IQDEE KKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +K NLLISHVLVLTLF DEFSSDPADIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

1.7e-209

85.65

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPD+N QSPA KKKKSEK+KKRVPSVNAKIQVLSNHPQKTPPLV YFPSGFDPHKD +EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQ LKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQEKA+++RELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KL +LKQEDDPDTK DLD +MKNVVVNKEAL  T A+IARNIPTYN SATTP+EAYPLDKIILKGEWS+LEDLY  LQE AEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q++QDEE KK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPTSE+RR+STE  NLLISHVLVLTLF DEFSSDP+DIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

4.1e-211

86.33

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Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPDANSQSPA KKKKSEK+KKRVPSVNAKIQVLSNHPQKTPPLV YFPSGFDPHKDA+EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQ LKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQEKA+++RELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLH+LKQEDDPDTK DLD +MKNVVVNKEAL  T A+IARNIPTYN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY
        Q++QDEE KK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPTSE+RR+STE  NLLISHVLVLTLF DEFSSDP+DIAKDLRTSPY
Subjt:  QNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

3.5e-10

25.56

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Query:  KKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCT
        K K  K +         +++L       PPLV    SGF P             + R ++ K  N+ NR   ++  T   V F   N   ++TA  +   
Subjt:  KKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCT

Query:  YALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNL-YGTKRSKTQAMKLHA--LKQEDDPDTKNDLDVRMKN
        Y L V DK  ++ KIVP      F      R     + +   +  +  +V       R    L +GT++S+   M+  A  +K E   D K+ L   + N
Subjt:  YALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNL-YGTKRSKTQAMKLHA--LKQEDDPDTKNDLDVRMKN

Query:  VVVNKEALGGTHAEIA------RNIPTYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISANYPSFVRNRIYKLQNIQDEEAKKKLCC
        V    EAL  T  +IA      R IP  N  A + ++AY L+ II K E+S  +++ L     E      +   +  F+  R  +L +I  EE  +K   
Subjt:  VVVNKEALGGTHAEIA------RNIPTYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISANYPSFVRNRIYKLQNIQDEEAKKKLCC

Query:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTSE---SRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPYDLRLHFDN
        I  YI+ L  +   + S+G+  + +      P +L       F  +    S ++S+ + + +I ++LVL L VD +S+D   +A DL          F  
Subjt:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTSE---SRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPYDLRLHFDN

Query:  LGCKFIR---------------KNNLSLATLPIPLQFPELRQKRRR
        +GC+ +                  N   A L IPL+FP+ R+ R R
Subjt:  LGCKFIR---------------KNNLSLATLPIPLQFPELRQKRRR

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

1.4e-11

22.26

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Query:  QHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTK--RSKTQAMKLHALKQEDDPDTKNDLDVR
        ++  YA+G+ DK T+ LKIVP     I  ++  V G  ++ + S  ++ E     E+ D+I++L + +G+K  + K Q M++  ++  D   T   +D  
Subjt:  QHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTK--RSKTQAMKLHALKQEDDPDTKNDLDVR

Query:  MKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISANYPSFVRNRIYKLQNIQDEEAKKKLCCIFSYIT
        +KN + + E+      E   ++P ++A     ++ Y ++ I+    +  L    F   + +T+E  +  P + ++++ + ++I+DEE     C + +++ 
Subjt:  MKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISANYPSFVRNRIYKLQNIQDEEAKKKLCCIFSYIT

Query:  H---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRK
        +   L+K K  H    +      ++ + L   F S     +   IS +    + +++ +  L +++F  +D   +A+ L  +      HF  +GCK +R 
Subjt:  H---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRK

Query:  NNLSLAT-LPIPLQFPELR
         +   +  L  PL+ P+ R
Subjt:  NNLSLAT-LPIPLQFPELR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

1.6e-95

44.44

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Query:  ELEENHNAEPDANSQSPAKKK---------KSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHK-NKPNRMQ
        E  +  N E D N+    +KK         ++E   +    V  K+  ++  P +  P+V YF +G+DP K   +       + +  VYKHK +   R+Q
Subjt:  ELEENHNAEPDANSQSPAKKK---------KSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHK-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKADRIRELTNLYGTKRSK
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  + L+I+P+A N I RL+P+V+  + +E E S S   +EL   +  +R R     Y TK++ 
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKADRIRELTNLYGTKRSK

Query:  TQAMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISAN-YPSFVRNRI
        T+  K  AL   DD  T+  LD ++  + VN  AL GT + +ARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+ LQ+  E +   YP FVRNR+
Subjt:  TQAMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISAN-YPSFVRNRI

Query:  YKLQNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRT
        Y+L++I+D+  K+ +C   + +THL+K+KD++SM    SAK HK+P + RQKF+SMF  SES RI  +K NLLIS+VLVL+L VD F +DP DIAKDLR 
Subjt:  YKLQNIQDEEAKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRT

Query:  SPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR
        S  +LR HF  LGCKF+++N+ ++ATLP PL FPE+ ++RR
Subjt:  SPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACGGAAGACACGAAATCTCTTGAATTAGAAGAAAACCATAACGCAGAACCAGACGCAAACTCACAGTCTCCAGCGAAGAAGAAGAAGAGTGAAAAAAGGAAGAAGCG
AGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAACTCCGCCGTTAGTGGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCCGACG
AGGAAGCAGCCGAGGAACAGAATTCCGTTAGGGCTAGGGTTTATAAGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTT
GTTGGTACCAATTATTTGGGCGAGGCTACAGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGGCCACCCAAATCTTAAAGATAGTGCCTATTGCATC
AAATATGATATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTTTCTGTGCAGGAGAAAGCTGATAGAA
TAAGAGAGCTCACCAATCTCTATGGAACAAAGAGGTCAAAAACGCAGGCAATGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGATACCAAGAATGATCTAGATGTG
AGAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGGGAGGTACGCATGCAGAAATTGCTCGTAATATACCAACATATAATGCTTCTGCAACTACTCCACAAGAAGCTTA
CCCACTCGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTCTACTTTCGTTTGCAAGAAACAGCTGAAATAAGTGCTAATTATCCATCCTTTGTCCGCA
ACAGAATTTATAAATTGCAAAACATTCAGGACGAGGAAGCGAAGAAGAAGCTCTGCTGCATATTTTCATATATTACTCATCTAATAAAGTATAAGGATCAACATTCTATG
GGTGACGTGTCTTCTGCAAAGGGCCATAAAATTCCTAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCGACTTCCGAGTCGAGGAGAATTTCAACAGAGAAGAGCAA
TCTTCTCATTAGCCACGTTTTGGTGCTTACGCTATTTGTCGATGAATTCAGCAGCGATCCAGCAGACATAGCAAAGGATCTGAGAACTAGTCCTTACGATCTAAGACTCC
ATTTTGATAACTTGGGTTGCAAGTTTATACGTAAGAACAATTTGTCATTGGCTACACTTCCTATACCCCTTCAATTTCCAGAGTTGAGGCAAAAGAGACGACGATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MTEDTKSLELEENHNAEPDANSQSPAKKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDF
VGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQAMKLHALKQEDDPDTKNDLDV
RMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKLQNIQDEEAKKKLCCIFSYITHLIKYKDQHSM
GDVSSAKGHKIPSMLRQKFSSMFPTSESRRISTEKSNLLISHVLVLTLFVDEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

HG10023462 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome