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IVF0000003 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000003
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationchr07:20218850..20219203
RNA-Seq ExpressionIVF0000003
SyntenyIVF0000003
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146566.1 nuclear transcription factor Y subunit C-3 [Cucumis sativus]3.09e-7294.96Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  A--ATAGDVGESENISVGC
        A  A  GD+GESE ISVGC
Subjt:  A--ATAGDVGESENISVGC

XP_008452022.1 PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo]5.40e-77100Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATAGDVGESENISVGC
        AATAGDVGESENISVGC
Subjt:  AATAGDVGESENISVGC

XP_022985461.1 nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]1.64e-6383.61Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTKRSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  -------AATAGDVGESENISV
               A+ AGD+ ESE +S+
Subjt:  -------AATAGDVGESENISV

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]4.43e-6586.55Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ----AATAGDVGESENISV
            A+ AGD+ ESE +S+
Subjt:  ----AATAGDVGESENISV

XP_038877432.1 nuclear transcription factor Y subunit C-1-like [Benincasa hispida]9.71e-7089.43Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  A------ATAGDVGESENISVGC
        A      A  GD+ ESEN+S+ C
Subjt:  A------ATAGDVGESENISVGC

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein3.2e-5494.96Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  A--ATAGDVGESENISVGC
        A  A  GD+GESE ISVGC
Subjt:  A--ATAGDVGESENISVGC

A0A1S3BSA0 nuclear transcription factor Y subunit C-1-like8.2e-58100Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATAGDVGESENISVGC
        AATAGDVGESENISVGC
Subjt:  AATAGDVGESENISVGC

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like8.2e-58100Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATAGDVGESENISVGC
        AATAGDVGESENISVGC
Subjt:  AATAGDVGESENISVGC

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like3.8e-4783.33Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  -----AATAGDVGESENISV
             A+ A ++ ESE +S+
Subjt:  -----AATAGDVGESENISV

A0A6J1J883 nuclear transcription factor Y subunit C-4-like1.3e-4783.61Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTKRSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  -------AATAGDVGESENISV
               A+ AGD+ ESE +S+
Subjt:  -------AATAGDVGESENISV

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-23.4e-2161.9Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + DVA+AI  TDVFDFL+ ++  E A
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA

Q655V5 Nuclear transcription factor Y subunit C-41.3e-2060.76Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        HSLPLARIKKIM K+ E+V+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K D+A+AI  TD++DFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9FMV5 Nuclear transcription factor Y subunit C-44.5e-2162.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

Q9SMP0 Nuclear transcription factor Y subunit C-17.7e-2163.29Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9ZVL3 Nuclear transcription factor Y subunit C-32.9e-2058.54Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

Arabidopsis top hitse value%identityAlignment
AT1G08970.4 nuclear factor Y, subunit C92.1e-2158.54Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

AT1G54830.2 nuclear factor Y, subunit C32.1e-2158.54Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

AT3G48590.1 nuclear factor Y, subunit C15.5e-2263.29Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

AT5G63470.1 nuclear factor Y, subunit C43.2e-2262.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

AT5G63470.2 nuclear factor Y, subunit C43.2e-2262.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCAGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAA
GATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGC
TTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCGACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCGCCACCGCGGGAGATGTTGGTGAAAGT
GAAAATATTTCGGTAGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAGCAGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAA
GATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGC
TTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCGACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCGCCACCGCGGGAGATGTTGGTGAAAGT
GAAAATATTTCGGTAGGTTGTTGA
Protein sequenceShow/hide protein sequence
MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATAGDVGES
ENISVGC