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IVF0000031 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000031
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:27090155..27090652
RNA-Seq ExpressionIVF0000031
SyntenyIVF0000031
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047166.1 retrotransposon protein [Cucumis melo var. makuwa]6.67e-8387.88Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        M EKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGP CSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVF  DRA  RFAETF D
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEPGGYDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEPGGYDRF+MGDGNEEFPP+Y+QGIDLS
Subjt:  VGSNEPGGYDRFNMGDGNEEFPPMYSQGIDLS

KAA0064030.1 retrotransposon protein [Cucumis melo var. makuwa]9.52e-86100Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEPGGYDRFNMGDGNEEFPPM
        VGSNEPGGYDRFNMGDGNEEFPPM
Subjt:  VGSNEPGGYDRFNMGDGNEEFPPM

KAA0065477.1 retrotransposon protein [Cucumis melo var. makuwa]3.65e-8387.97Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVFG DRAT RFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEPGG-YDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEPGG YDRF+MGDGNE+F P+YSQG+D+S
Subjt:  VGSNEPGG-YDRFNMGDGNEEFPPMYSQGIDLS

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]7.43e-8389.47Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVFG DRAT RFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEPGG-YDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEPGG YDRF+MGDGNE+FPP+YSQG+D+S
Subjt:  VGSNEPGG-YDRFNMGDGNEEFPPMYSQGIDLS

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]2.12e-8388.72Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVFG DRAT RFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEPGG-YDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEPGG YDRF+MGDGNE+FPP+YSQG+D+S
Subjt:  VGSNEPGG-YDRFNMGDGNEEFPPMYSQGIDLS

TrEMBL top hitse value%identityAlignment
A0A5A7TRV1 Retrotransposon protein2.0e-6588.72Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVFG DRAT RFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEP GGYDRF+MGDGNE+FPP+YSQG+D+S
Subjt:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS

A0A5A7V9W9 Retrotransposon protein2.3e-69100Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEPGGYDRFNMGDGNEEFPPM
        VGSNEPGGYDRFNMGDGNEEFPPM
Subjt:  VGSNEPGGYDRFNMGDGNEEFPPM

A0A5A7VES2 Retrotransposon protein1.6e-6589.47Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVFG DRAT RFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEP GGYDRF+MGDGNE+FPP+YSQG+D+S
Subjt:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS

A0A5D3CWL2 Retrotransposon protein2.0e-6588.72Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVFG DRAT RFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEP GGYDRF+MGDGNE+FPP+YSQG+D+S
Subjt:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS

A0A5D3DCZ1 Retrotransposon protein2.0e-6588.72Show/hide
Query:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD
        MAEKLPGCQV+ATTVIDCRIKTLK  FQ IAEMRGPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGL+NKPFPYY+ELTYVFG DRAT RFAETFAD
Subjt:  MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFAD

Query:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS
        VGSNEP GGYDRF+MGDGNE+FPP+YSQG+D+S
Subjt:  VGSNEP-GGYDRFNMGDGNEEFPPMYSQGIDLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein4.0e-0533.33Show/hide
Query:  GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGC
        GF W++    I A+  ++D++++ HP A+    K  P YN+L  +F C
Subjt:  GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGC

AT2G24960.2 unknown protein9.5e-0728.3Show/hide
Query:  VIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFG---CDRATSRFAETF-----ADVGSNEP
        V+  R K L+  + DI  +     +GF W+     +IA+ ++++ ++++HP A+    K  P Y  L ++FG    D   +R A+ F       V  NE 
Subjt:  VIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFG---CDRATSRFAETF-----ADVGSNEP

Query:  GGYDRF
        G  D F
Subjt:  GGYDRF

AT4G02210.1 unknown protein3.6e-0627.78Show/hide
Query:  VIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFG
        V+  R K+L+  F  I  +      GF W++E + + A+  ++ +++++H  A+  M +P PYY +L  + G
Subjt:  VIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFG

AT4G02210.2 unknown protein3.6e-0627.78Show/hide
Query:  VIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFG
        V+  R K+L+  F  I  +      GF W++E + + A+  ++ +++++H  A+  M +P PYY +L  + G
Subjt:  VIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAAACTACCTGGATGTCAGGTCCAAGCAACGACTGTAATTGATTGTAGAATTAAGACATTGAAGGGAGCATTCCAGGACATCGCCGAAATGCGGGGGCCAGC
GTGCAGTGGCTTTGGATGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCATGAACAAAC
CATTCCCGTATTACAACGAACTTACATATGTCTTCGGTTGCGATAGGGCGACGAGTCGGTTCGCTGAGACATTCGCCGACGTAGGGTCTAACGAGCCTGGTGGATATGAC
AGATTTAATATGGGGGATGGAAACGAGGAGTTCCCACCCATGTATAGCCAGGGGATTGACCTCTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGAAACTACCTGGATGTCAGGTCCAAGCAACGACTGTAATTGATTGTAGAATTAAGACATTGAAGGGAGCATTCCAGGACATCGCCGAAATGCGGGGGCCAGC
GTGCAGTGGCTTTGGATGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCATGAACAAAC
CATTCCCGTATTACAACGAACTTACATATGTCTTCGGTTGCGATAGGGCGACGAGTCGGTTCGCTGAGACATTCGCCGACGTAGGGTCTAACGAGCCTGGTGGATATGAC
AGATTTAATATGGGGGATGGAAACGAGGAGTTCCCACCCATGTATAGCCAGGGGATTGACCTCTCGTAG
Protein sequenceShow/hide protein sequence
MAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFADVGSNEPGGYD
RFNMGDGNEEFPPMYSQGIDLS