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IVF0000049 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000049
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr01:29118817..29119682
RNA-Seq ExpressionIVF0000049
SyntenyIVF0000049
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036773.1 uncharacterized protein E6C27_scaffold20G00570 [Cucumis melo var. makuwa]1.31e-5855.83Show/hide
Query:  MHGVRMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAKA-------------------------------HFHESSSSEDVFVPTA--
        MHGV+MR  RFKSTPP+R Y++ SEKSQVNV  S HLPVN EVI +ST K                                + HESSS EDVF PT   
Subjt:  MHGVRMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAKA-------------------------------HFHESSSSEDVFVPTA--

Query:  ----------------VRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVNDELQSETQQSPGVSR
                        ++SSIQVDAS+TNQ SV +HNP+D+ST+NVGRNDV  VESP+   SPAA+EHV+PTDTCATNT+E +VNDELQ ETQQSPGVSR
Subjt:  ----------------VRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVNDELQSETQQSPGVSR

Query:  PKGKKV
        PKGKKV
Subjt:  PKGKKV

KAA0051363.1 uncharacterized protein E6C27_scaffold55G00870 [Cucumis melo var. makuwa]7.93e-6462.23Show/hide
Query:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP
        H HESS +ED+FVPT                  +++SSIQV+AS+ +Q+ VPE NPVD+STKNVGRNDV   ESP+T      D HV P +TC T+TIEP
Subjt:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP

Query:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        +VN++ Q ETQ   GVSRPKGKK +QNR NIT KT R KIP NIP  PIDGISFHLEE+VQRW+YVVHRRIADE+N+SDKHHS LSVM
Subjt:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

KAA0065524.1 gag/pol protein [Cucumis melo var. makuwa]2.63e-7351.76Show/hide
Query:  RMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFHE
        R+RG  FKSTPP+R Y++PS+K QVNV +S +L V+ E IA+  A+                                                  H HE
Subjt:  RMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFHE

Query:  SSSSEDVFVPTA------------------VRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVND
        SSS +D+FVPT                   V+SSIQVDAS+T+ + VP+ NP+D++T+NVGRNDVP  ES         D HV  T+TCAT+TIEP+VND
Subjt:  SSSSEDVFVPTA------------------VRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVND

Query:  ELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        ELQ ETQQSPGVSRPKGKK +QNR+NITTKTRR KIP+NIP  PIDGISFHLEE+VQRW+YVV RRIADEVN+SDKHHS LS+M
Subjt:  ELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

TYK23857.1 uncharacterized protein E5676_scaffold419G00280 [Cucumis melo var. makuwa]2.10e-6462.77Show/hide
Query:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP
        H HESS +ED+FVPT                  +++SSIQV+AS+ +Q+ VPE NPVD+STKNVGRNDV   ESP+T      D HV P +TC T+TIEP
Subjt:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP

Query:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        +VN++ Q ETQ   GVSRPKGKK +QNR NIT KT R KIP NIP  PIDGISFHLEE+VQRW+YVVHRRIADEVN+SDKHHS LSVM
Subjt:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

TYK29294.1 gag/pol protein [Cucumis melo var. makuwa]7.41e-7351.23Show/hide
Query:  VRMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFH
        +  +G  FKSTPP+R Y++PS+K QVNV +S +L V+ E IA+  A+                                                  H H
Subjt:  VRMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFH

Query:  ESSSSEDVFVPTA------------------VRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVN
        ESSS +D+FVPT                   V+SSIQVDASIT+ + VP+ NP+D++T+NVGRNDVP  ES         D HV  T+TCAT+TIEP+VN
Subjt:  ESSSSEDVFVPTA------------------VRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVN

Query:  DELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        DELQ ETQQSPGVSRPKGKK +QNR+NITTKTRR KIP+NIP  PIDGISFHLEE+VQRW+YVV RRIADEVN+SDKHHS LS+M
Subjt:  DELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

TrEMBL top hitse value%identityAlignment
A0A5A7T1I3 Uncharacterized protein3.6e-4655.56Show/hide
Query:  MHGVRMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAKA-------------------------------HFHESSSSEDVFVPT---
        MHGV+MR  RFKSTPP+R Y++ SEKSQVNV  S HLPVN EVI +ST K                                + HESSS EDVF PT   
Subjt:  MHGVRMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAKA-------------------------------HFHESSSSEDVFVPT---

Query:  ---------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVNDELQSETQQSPGVSR
                        ++SSIQVDAS+TNQ SV +HNP+D+ST+NVGRNDV  VESP+   SPAA+EHV+PTDTCATNT+E +VNDELQ ETQQSPGVSR
Subjt:  ---------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVNDELQSETQQSPGVSR

Query:  PKGKKVK
        PKGKKV+
Subjt:  PKGKKVK

A0A5A7U645 Uncharacterized protein7.4e-5262.23Show/hide
Query:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP
        H HESS +ED+FVPT                  +++SSIQV+AS+ +Q+ VPE NPVD+STKNVGRNDV   ESP+T      D HV P +TC T+TIEP
Subjt:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP

Query:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        +VN++ Q ETQ   GVSRPKGKK +QNR NIT KT R KIP NIP  PIDGISFHLEE+VQRW+YVVHRRIADE+N+SDKHHS LSVM
Subjt:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

A0A5A7VE22 Gag/pol protein2.1e-6251.76Show/hide
Query:  RMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFHE
        R+RG  FKSTPP+R Y++PS+K QVNV +S +L V+ E IA+  A+                                                  H HE
Subjt:  RMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFHE

Query:  SSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVND
        SSS +D+FVPT                   V+SSIQVDAS+T+ + VP+ NP+D++T+NVGRNDVP  E      S   D HV  T+TCAT+TIEP+VND
Subjt:  SSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVND

Query:  ELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        ELQ ETQQSPGVSRPKGKK +QNR+NITTKTRR KIP+NIP  PIDGISFHLEE+VQRW+YVV RRIADEVN+SDKHHS LS+M
Subjt:  ELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

A0A5D3DJU3 Uncharacterized protein3.3e-5262.77Show/hide
Query:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP
        H HESS +ED+FVPT                  +++SSIQV+AS+ +Q+ VPE NPVD+STKNVGRNDV   ESP+T      D HV P +TC T+TIEP
Subjt:  HFHESSSSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEP

Query:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        +VN++ Q ETQ   GVSRPKGKK +QNR NIT KT R KIP NIP  PIDGISFHLEE+VQRW+YVVHRRIADEVN+SDKHHS LSVM
Subjt:  NVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

A0A5D3E0G7 Gag/pol protein1.3e-6151.77Show/hide
Query:  RGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFHESS
        +G  FKSTPP+R Y++PS+K QVNV +S +L V+ E IA+  A+                                                  H HESS
Subjt:  RGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAK-------------------------------------------------AHFHESS

Query:  SSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVNDEL
        S +D+FVPT                   V+SSIQVDASIT+ + VP+ NP+D++T+NVGRNDVP  E      S   D HV  T+TCAT+TIEP+VNDEL
Subjt:  SSEDVFVPT------------------AVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPSTVGSPAADEHVNPTDTCATNTIEPNVNDEL

Query:  QSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM
        Q ETQQSPGVSRPKGKK +QNR+NITTKTRR KIP+NIP  PIDGISFHLEE+VQRW+YVV RRIADEVN+SDKHHS LS+M
Subjt:  QSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSVM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGTGTACGGATGAGGGGTTGTCGATTCAAAAGCACTCCTCCACAGAGACTGTATAAAATTCCATCAGAGAAATCTCAGGTAAATGTCTTTGAAAGTTTCCATTT
ACCTGTGAATTATGAGGTTATTGCTAAAAGTACTGCGAAGGCTCATTTTCATGAGAGCTCCTCCTCTGAAGATGTGTTTGTTCCAACAGCAGTTAGGTCATCGATTCAGG
TTGATGCTTCTATTACAAATCAGCAATCAGTTCCCGAACATAATCCTGTTGATGAATCTACTAAGAATGTGGGAAGAAATGATGTTCCTACTGTTGAGTCTCCTTCTACT
GTTGGGTCTCCTGCCGCTGATGAACATGTCAACCCTACTGATACTTGTGCAACCAACACTATTGAACCAAATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTCC
TGGTGTATCTAGGCCAAAGGGAAAGAAGGTTAAACAAAACCGGCAAAATATTACTACAAAGACTAGAAGGACGAAGATACCCACTAACATTCCATTTTTTCCCATTGATG
GAATCTCGTTTCATCTCGAAGAAAATGTTCAAAGATGGAGGTATGTTGTGCACCGAAGGATTGCAGATGAGGTAAATGTTTCTGATAAACATCATTCCTTTTTAAGTGTT
ATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGTGTACGGATGAGGGGTTGTCGATTCAAAAGCACTCCTCCACAGAGACTGTATAAAATTCCATCAGAGAAATCTCAGGTAAATGTCTTTGAAAGTTTCCATTT
ACCTGTGAATTATGAGGTTATTGCTAAAAGTACTGCGAAGGCTCATTTTCATGAGAGCTCCTCCTCTGAAGATGTGTTTGTTCCAACAGCAGTTAGGTCATCGATTCAGG
TTGATGCTTCTATTACAAATCAGCAATCAGTTCCCGAACATAATCCTGTTGATGAATCTACTAAGAATGTGGGAAGAAATGATGTTCCTACTGTTGAGTCTCCTTCTACT
GTTGGGTCTCCTGCCGCTGATGAACATGTCAACCCTACTGATACTTGTGCAACCAACACTATTGAACCAAATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTCC
TGGTGTATCTAGGCCAAAGGGAAAGAAGGTTAAACAAAACCGGCAAAATATTACTACAAAGACTAGAAGGACGAAGATACCCACTAACATTCCATTTTTTCCCATTGATG
GAATCTCGTTTCATCTCGAAGAAAATGTTCAAAGATGGAGGTATGTTGTGCACCGAAGGATTGCAGATGAGGTAAATGTTTCTGATAAACATCATTCCTTTTTAAGTGTT
ATGTGA
Protein sequenceShow/hide protein sequence
MHGVRMRGCRFKSTPPQRLYKIPSEKSQVNVFESFHLPVNYEVIAKSTAKAHFHESSSSEDVFVPTAVRSSIQVDASITNQQSVPEHNPVDESTKNVGRNDVPTVESPST
VGSPAADEHVNPTDTCATNTIEPNVNDELQSETQQSPGVSRPKGKKVKQNRQNITTKTRRTKIPTNIPFFPIDGISFHLEENVQRWRYVVHRRIADEVNVSDKHHSFLSV
M