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IVF0000094 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000094
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:12568076..12568461
RNA-Seq ExpressionIVF0000094
SyntenyIVF0000094
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032197.1 retrotransposon protein [Cucumis melo var. makuwa]6.38e-18100Show/hide
Query:  SNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        SNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
Subjt:  SNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]1.67e-1567.92Show/hide
Query:  DRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        DR    F E F D+ SNEP GYEGFDM DGNDI+F FMY+QGID+SQDD+R S
Subjt:  DRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

KAA0049673.1 retrotransposon protein [Cucumis melo var. makuwa]3.59e-1666.67Show/hide
Query:  RDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        +D+    F E FVDV SNEPVGYEGFDM DGND++F  MY+QGID+SQDD+R S
Subjt:  RDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

TYK22193.1 retrotransposon protein [Cucumis melo var. makuwa]1.41e-2998.18Show/hide
Query:  RRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        RRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMY+QGIDLSQDDIRAS
Subjt:  RRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

XP_016900897.1 PREDICTED: uncharacterized protein LOC103491960 [Cucumis melo]3.25e-1961.11Show/hide
Query:  MRQNASLPRKN--CLTTRRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        MRQ+ASLPR+N   +  RRDR    F E FVD+ SNE  GYEGFDM D ND++F FMY+Q I +SQDD+RAS
Subjt:  MRQNASLPRKN--CLTTRRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

TrEMBL top hitse value%identityAlignment
A0A1S4DY48 uncharacterized protein LOC1034919602.8e-1461.11Show/hide
Query:  MRQNASLPRKN--CLTTRRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        MRQ+ASLPR+N   +  RRDR    F E FVD+ SNE  GYEGFDM D ND++F FMY+Q I +SQDD+RAS
Subjt:  MRQNASLPRKN--CLTTRRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

A0A5A7SS28 Retrotransposon protein1.2e-12100Show/hide
Query:  SNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        SNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
Subjt:  SNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

A0A5A7U1E5 Retrotransposon protein2.0e-1266.67Show/hide
Query:  RDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        +D+    F E FVDV SNEPVGYEGFDM DGND++F  MY+QGID+SQDD+R S
Subjt:  RDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

A0A5D3BQI7 Retrotransposon protein1.2e-1267.92Show/hide
Query:  DRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        DR    F E F D+ SNEP GYEGFDM DGNDI+F FMY+QGID+SQDD+R S
Subjt:  DRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

A0A5D3DF77 Retrotransposon protein2.1e-2298.18Show/hide
Query:  RRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS
        RRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMY+QGIDLSQDDIRAS
Subjt:  RRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCGGATGGAATGATGAGGCAAAATGCATCATTGCCCAGAAAGAACTGTTTGACAACTAGGAGGGATAGGGTGTTAAGTTGCTTTACTGAGATGTTTGTTGACGT
CAGGTCTAATGAGCCTGTCGGGTATGAGGGGTTTGACATGCTAGATGGAAACGATATAAAGTTTTCGTTCATGTACAATCAGGGGATTGACTTGTCCCAAGATGATATAC
GCGCCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCGGATGGAATGATGAGGCAAAATGCATCATTGCCCAGAAAGAACTGTTTGACAACTAGGAGGGATAGGGTGTTAAGTTGCTTTACTGAGATGTTTGTTGACGT
CAGGTCTAATGAGCCTGTCGGGTATGAGGGGTTTGACATGCTAGATGGAAACGATATAAAGTTTTCGTTCATGTACAATCAGGGGATTGACTTGTCCCAAGATGATATAC
GCGCCTCATGA
Protein sequenceShow/hide protein sequence
MGSDGMMRQNASLPRKNCLTTRRDRVLSCFTEMFVDVRSNEPVGYEGFDMLDGNDIKFSFMYNQGIDLSQDDIRAS