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IVF0000176 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000176
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:27853996..27854331
RNA-Seq ExpressionIVF0000176
SyntenyIVF0000176
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575236.1 hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sororia]4.25e-2249.06Show/hide
Query:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
        MF FIL++ H   +A+ V+A +  +  LKFS E  SIM + +P  +C IA+QL PP+F Q Y+C  LHYSWI I+  FP M D+ R GFSSL+FSF    
Subjt:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL

Query:  HADLTF
         A+L F
Subjt:  HADLTF

KGN45638.2 hypothetical protein Csa_005465, partial [Cucumis sativus]2.03e-6994.55Show/hide
Query:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
        MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS 
Subjt:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL

Query:  HADLTFCSRD
        HADLTFCSRD
Subjt:  HADLTFCSRD

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.04e-72100Show/hide
Query:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
        MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
Subjt:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

WP_217833378.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.34e-3882.67Show/hide
Query:  LEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPE
        L+EIH FVDA+S+LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSCQQLHYSWIYIN FFPE
Subjt:  LEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPE

XP_023006011.1 uncharacterized protein LOC111498888 [Cucurbita maxima]5.65e-2156.84Show/hide
Query:  HSFVDAVSVLAGL-GYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHAD
        H  VDA SVLA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  HSFVDAVSVLAGL-GYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHAD

TrEMBL top hitse value%identityAlignment
A0A0A0K833 Uncharacterized protein4.4e-5394.59Show/hide
Query:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
        MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS 
Subjt:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein6.5e-57100Show/hide
Query:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
        MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
Subjt:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

A0A6J1H4N0 uncharacterized protein LOC1114600092.5e-1655.21Show/hide
Query:  IHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHAD
        +H  VDA SVLA     +F++KFSP MFSIMA  TPS  C I LQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHAD

A0A6J1KWL1 uncharacterized protein LOC1114988886.6e-1756.25Show/hide
Query:  IHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHAD
        +H  VDA SVLA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHAD

A0A6J1L2R2 uncharacterized protein LOC1114993084.4e-1341.44Show/hide
Query:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL
        +F F+L ++   VDA SV+A    + ++KFS EMF+IMA+  P+    IAL L+P FF+ +Y C +L  SW ++   FP M DME +GF+SL+F+     
Subjt:  MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSL

Query:  HADLTFCSRDG
         A+L F + +G
Subjt:  HADLTFCSRDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGTCTTTATACTGGAAGAAATCCACAGCTTCGTCGATGCCGTCTCCGTCCTCGCCGGCCTTGGCTACGTTTTCAATCTCAAATTCTCACCAGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCCCTTTTTCCCTGAAATGTTCGATATGGAACGAACCGGTTTTTCTTCCCTCACGTTCTCTTTCGCAGATTCGCTCCATGCCGACCTCACATTTTGCAGTCGTGAT
GGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGTCTTTATACTGGAAGAAATCCACAGCTTCGTCGATGCCGTCTCCGTCCTCGCCGGCCTTGGCTACGTTTTCAATCTCAAATTCTCACCAGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCCCTTTTTCCCTGAAATGTTCGATATGGAACGAACCGGTTTTTCTTCCCTCACGTTCTCTTTCGCAGATTCGCTCCATGCCGACCTCACATTTTGCAGTCGTGAT
GGTTAG
Protein sequenceShow/hide protein sequence
MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRD
G