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IVF0000239 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000239
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:10674145..10674659
RNA-Seq ExpressionIVF0000239
SyntenyIVF0000239
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0034470 - ncRNA processing (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]1.32e-71100Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RETIEIESSLHKRLYAE
Subjt:  RETIEIESSLHKRLYAE

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]2.74e-6084.62Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKT +EMG Q  RDTEEDDMDINLE FDI NPHGLE PSGEDM STPTSM HDV SS+PSKKRRSYS DLMDTF ASMRETSKEI KIAAWQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RE +EIESS+HKRLYAE
Subjt:  RETIEIESSLHKRLYAE

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]5.07e-6288.89Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKT VEM SQT RDTEEDDMDINLE FDI NPHGLE PSGEDMPSTPTSM HD  SSRPSKKRRSYSGDLMDTF ASMRETSKEIGKIA WQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RE +EIESSLHKRLYAE
Subjt:  RETIEIESSLHKRLYAE

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]3.54e-72100Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RETIEIESSLHKRLYAE
Subjt:  RETIEIESSLHKRLYAE

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]2.65e-6084.62Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKT +EMG Q  RDTEEDDMDINLE FDI NPHGLE PSGEDM STPTSM HDV SS+PSKKRRSYS DLMDTF ASMRETSKEI KIAAWQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RE +EIESS+HKRLYAE
Subjt:  RETIEIESSLHKRLYAE

TrEMBL top hitse value%identityAlignment
A0A5A7U3R2 Retrotransposon protein2.2e-58100Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RETIEIESSLHKRLYAE
Subjt:  RETIEIESSLHKRLYAE

A0A5A7VG45 Retrotransposon protein1.5e-4685.22Show/hide
Query:  RATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRE
        +ATGGRCKT VE+GSQT RDTEEDDMDINLE FDI NPHGLE PSGEDMPSTPTSM HD    RPSKKRR YSGDLMDTF ASMRETSKEIGKIAAWQRE
Subjt:  RATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRE

Query:  TIEIESSLHKRLYAE
         +EIESSLHKRLY E
Subjt:  TIEIESSLHKRLYAE

A0A5A7VGQ0 Retrotransposon protein1.5e-4684.62Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKT +EMG Q  RDTEEDDMDINLE FDI NPHGLE PSGEDM STPTSM HDV SS+PSKKRRSYS DLMDTF ASMRETSKEI KIAAWQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RE +EIESS+HKRLYAE
Subjt:  RETIEIESSLHKRLYAE

A0A5D3C7T4 Uncharacterized protein8.5e-5088.89Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKT VEM SQT RDTEEDDMDINLE FDI NPHGLE PSGEDMPSTPTSM HD  SSRPSKKRRSYSGDLMDTF ASMRETSKEIGKIA WQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RE +EIESSLHKRLYAE
Subjt:  RETIEIESSLHKRLYAE

A0A5D3C7X6 Retrotransposon protein2.2e-58100Show/hide
Query:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
        RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ
Subjt:  RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQ

Query:  RETIEIESSLHKRLYAE
        RETIEIESSLHKRLYAE
Subjt:  RETIEIESSLHKRLYAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGGTTAAGAGATAGGGCTACTGGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGACTGTAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGA
ACACTTTGATATTCTAAATCCACATGGACTCGAGCTACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGTACATGATGTGAAATCATCTAGGCCAAGTAAGA
AAAGACGGTCATATTCAGGAGACCTCATGGACACATTTCATGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAACAATTGAAATA
GAATCATCCCTACACAAACGATTATATGCTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGGTTAAGAGATAGGGCTACTGGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGACTGTAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGA
ACACTTTGATATTCTAAATCCACATGGACTCGAGCTACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGTACATGATGTGAAATCATCTAGGCCAAGTAAGA
AAAGACGGTCATATTCAGGAGACCTCATGGACACATTTCATGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAACAATTGAAATA
GAATCATCCCTACACAAACGATTATATGCTGAATAA
Protein sequenceShow/hide protein sequence
MTRLRDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEI
ESSLHKRLYAE