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IVF0000250 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000250
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr05:21271704..21272033
RNA-Seq ExpressionIVF0000250
SyntenyIVF0000250
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033502.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.61e-3278.38Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQ
        MTT K+EIEKFDGN DFT WT+RITTI GS K LKAL++PKELPATL K ERET+EEVAYGTL+MNI DN+LRQ
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQ

KAA0042267.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.64e-3272.73Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKL
        MTT+K+EIEKFDGN D TLWTKRITTILGS KALKAL++PKELPATL K ERETME VAYGTL+MNI DNVLRQ      +   ++KL
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKL

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.16e-4374.07Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD
        MTT K+EIEKFDGN DFTLWTKRIT ILGS KALKAL++PKELPATL K ERET+EEVAY TLIMNI DNVLRQVIE++T FATW+KLK+LYEKK +   
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD

Query:  VHKGEVIF
        +   E +F
Subjt:  VHKGEVIF

KAA0060284.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]8.63e-4076.29Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPI
        MTT K+EIEKFDGN DFTL TKRIT ILGS KALKAL++PKEL ATL K ERET+EEVAYGTLIMNI +NVLRQ+IE++T F TW+KLK+LYEKK +
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPI

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.73e-4071.3Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD
        MTT K+EIEKFDGN DFTL TKRIT  LGS KALKAL++PKELPATL K ERET+EEVAY TLIMNI DNVLRQVIE++T FATW+ LK+LYEKK +   
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD

Query:  VHKGEVIF
        +   E +F
Subjt:  VHKGEVIF

TrEMBL top hitse value%identityAlignment
A0A5A7TKQ1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-2583.78Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQ
        MTT+K+EIEKFDGN D TLWTKRITTILGS KALKAL++PKELPATL K ERETME VAYGTL+MNI DNVLRQ
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQ

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-3674.07Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD
        MTT K+EIEKFDGN DFTLWTKRIT ILGS KALKAL++PKELPATL K ERET+EEVAY TLIMNI DNVLRQVIE++T FATW+KLK+LYEKK +   
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD

Query:  VHKGEVIF
        +   E +F
Subjt:  VHKGEVIF

A0A5A7UJ23 Integrase catalytic domain-containing protein2.0e-2678.05Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDF
        MTT K+EIE FDGNRDFT WTKRIT ILGS KALKA ++PKELPATL K ERET+EEVAY TLIMNI DNVLRQVIE++  F
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDF

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass8.5e-3369.44Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD
        MTT K+EIEKFDGN DFTL TKRIT ILGS KALKAL++PKEL ATL K ERET+EEVAYGTLIMNI +NVLRQ+IE++T F TW+KLK+LYEKK +   
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD

Query:  VHKGEVIF
        +   + +F
Subjt:  VHKGEVIF

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-3371.3Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD
        MTT K+EIEKFDGN DFTL TKRIT  LGS KALKAL++PKELPATL K ERET+EEVAY TLIMNI DNVLRQVIE++T FATW+ LK+LYEKK +   
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD

Query:  VHKGEVIF
        +   E +F
Subjt:  VHKGEVIF

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-0725.49Show/hide
Query:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD
        M+ +KYE+ KF+G+  F+ W +R+  +L      K L    + P T+   +   ++E A   + +++ D+V+  +I++ T    W +L++LY  K +   
Subjt:  MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQD

Query:  VH
        ++
Subjt:  VH

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTATAAAGTACGAAATTGAGAAATTTGATGGGAATAGAGACTTTACCTTGTGGACAAAAAGAATCACGACAATCTTGGGTTCACATAAGGCCTTGAAAGCTTT
ACAAAACCCCAAAGAACTCCCTGCAACTTTGGCCAAATTAGAAAGAGAAACAATGGAAGAGGTAGCTTACGGTACACTCATTATGAATATTATTGATAATGTGTTGAGAC
AAGTAATTGAAAAATCCACTGATTTTGCTACTTGGCAGAAATTGAAGGCACTGTATGAAAAAAAACCTATCAAACAAGATGTTCATAAGGGAGAAGTTATTTTCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTATAAAGTACGAAATTGAGAAATTTGATGGGAATAGAGACTTTACCTTGTGGACAAAAAGAATCACGACAATCTTGGGTTCACATAAGGCCTTGAAAGCTTT
ACAAAACCCCAAAGAACTCCCTGCAACTTTGGCCAAATTAGAAAGAGAAACAATGGAAGAGGTAGCTTACGGTACACTCATTATGAATATTATTGATAATGTGTTGAGAC
AAGTAATTGAAAAATCCACTGATTTTGCTACTTGGCAGAAATTGAAGGCACTGTATGAAAAAAAACCTATCAAACAAGATGTTCATAAGGGAGAAGTTATTTTCATTTAA
Protein sequenceShow/hide protein sequence
MTTIKYEIEKFDGNRDFTLWTKRITTILGSHKALKALQNPKELPATLAKLERETMEEVAYGTLIMNIIDNVLRQVIEKSTDFATWQKLKALYEKKPIKQDVHKGEVIFI