; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0000268 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000268
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptiontRNA-intron lyase
Genome locationchr11:24873363..24876345
RNA-Seq ExpressionIVF0000268
SyntenyIVF0000268
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035302.1 tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo var. makuwa]3.19e-175100Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
        EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
Subjt:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

XP_004149565.1 tRNA-splicing endonuclease subunit Sen2-1 [Cucumis sativus]5.41e-17790.41Show/hide
Query:  FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTA
        F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+T+LHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTA
Subjt:  FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTA

Query:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGR
        EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGR
Subjt:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGR

Query:  DSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        DSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  DSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

XP_008463899.1 PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo]5.06e-204100Show/hide
Query:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
        MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
Subjt:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF

Query:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
        GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
Subjt:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV

Query:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
Subjt:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

XP_008463900.1 PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X2 [Cucumis melo]2.38e-16686.33Show/hide
Query:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
        MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
Subjt:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF

Query:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
        GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
Subjt:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV

Query:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        LVLSEGRDSNGNGRLRV                                      YSIEERTVTRWSPEQCRENPAEV
Subjt:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

XP_038900547.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida]8.05e-15388.28Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGK SEAKALADP+S+ VL LQSS  QSNA+GLLSGS +LY ADEEQTDLLNR CFGR ILTAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
        E N QELW+ MK+QK TFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHPALVHSE+AVLVLSEG  SN NGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

TrEMBL top hitse value%identityAlignment
A0A0A0KEN4 tRNA-intron lyase1.0e-13890.41Show/hide
Query:  FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTA
        F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+T+LHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTA
Subjt:  FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTA

Query:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGR
        EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGR
Subjt:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGR

Query:  DSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        DSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  DSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

A0A1S3CK86 tRNA-intron lyase3.0e-159100Show/hide
Query:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
        MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
Subjt:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF

Query:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
        GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
Subjt:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV

Query:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
Subjt:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

A0A1S3CKR5 tRNA-intron lyase2.9e-13086.33Show/hide
Query:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
        MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF
Subjt:  MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCF

Query:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
        GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV
Subjt:  GRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAV

Query:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        LVLSEGRDSNGNGRLRV                                      YSIEERTVTRWSPEQCRENPAEV
Subjt:  LVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

A0A5A7SVN0 tRNA-intron lyase9.4e-137100Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
        EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
Subjt:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

A0A6J1FWV5 tRNA-intron lyase1.3e-11484.94Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGKASEA+ALADP+S  VL LQSS  QS+A+GLLSG +ILY ADEEQTDLLNR CFGR I+TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD 
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
        E N QELW+ MK++KATFPEFY+AY+HLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG  SN N RLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
        VNDNGS  VSPSCLD+YSIEERTVTRWSPEQCRENP +V
Subjt:  VNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

SwissProt top hitse value%identityAlignment
Q5M954 tRNA-splicing endonuclease subunit Sen21.9e-1729.31Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNG
        ++ Q  +EEAF+L+Y L CL I   ++  +   +LW+     + TF   Y+AY + R K WV + G +YG D + YR  P   H+ ++V++  E  D N 
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNG

Query:  NGRLR---VWSDFLCTIRLCGSVAKTL----LVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
         G LR    W       R+ G+V+K L    L+        +  +P C+    ++E  ++RW   + R +  E+
Subjt:  NGRLR---VWSDFLCTIRLCGSVAKTL----LVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

Q5Z6B1 Probable tRNA-splicing endonuclease subunit Sen26.2e-6151.02Show/hide
Query:  PRWK----GKASEAKALADPISSTVLHLQSSFIQSNARGLLS---GSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIV
        PRWK    GK   + A A+P+S+ V  L++SFI S    +LS   GS +L +   EQ  +LNR  FG  I  A   K WFQ   EE FYL + LNC+++ 
Subjt:  PRWK----GKASEAKALADPISSTVLHLQSSFIQSNARGLLS---GSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIV

Query:  DGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD-SNGNGRLRVWSDFLCTIRLCGSVAK
           + +M+  ELW Y ++   +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG +  N  GRL VWSD LC +R  GSVAK
Subjt:  DGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD-SNGNGRLRVWSDFLCTIRLCGSVAK

Query:  TLLVLSVNDNGS-EFVSPSCLDSYSIEERTVTRWSPEQCRENPAE
        TLLVL+++ +   E  SP CL+   + ERT+TRW  +QCRE   E
Subjt:  TLLVLSVNDNGS-EFVSPSCLDSYSIEERTVTRWSPEQCRENPAE

Q6P7W5 tRNA-splicing endonuclease subunit Sen21.1e-1729.31Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNG
        ++ Q  +EEAF+L+Y L CL I   ++  +   +LW+     + TF   Y+AY + R K WV + G +YG D + YR  P   H+ ++V++  E  D N 
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNG

Query:  NGRLR---VWSDFLCTIRLCGSVAKTL----LVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV
         G LR    W       R+ G+V+K L    L+        +  +P C+    ++E  ++RW   + R +  E+
Subjt:  NGRLR---VWSDFLCTIRLCGSVAKTL----LVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-22.6e-6754.01Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
          N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   D     RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDN--GSEFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G +     CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSEFVSPSCLDSYSIEERTVTRWSPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-11.5e-6755.46Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS  Q+ A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G    GN RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVND--NGSEFVSPSCLDSYSIEERTVTRWSPEQCREN
         VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Subjt:  SVND--NGSEFVSPSCLDSYSIEERTVTRWSPEQCREN

Arabidopsis top hitse value%identityAlignment
AT3G45577.1 tRNA-intron endonucleases2.1e-1638.35Show/hide
Query:  SMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD
        SMAPRWK                            A G LS   +      EQ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI     
Subjt:  SMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD

Query:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKN
          +N  +LWR +++ K  F   Y AY HLR KN
Subjt:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKN

AT3G45590.1 splicing endonuclease 11.1e-6855.46Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS  Q+ A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G    GN RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVND--NGSEFVSPSCLDSYSIEERTVTRWSPEQCREN
         VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Subjt:  SVND--NGSEFVSPSCLDSYSIEERTVTRWSPEQCREN

AT3G45590.2 splicing endonuclease 11.1e-6855.46Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS  Q+ A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G    GN RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVND--NGSEFVSPSCLDSYSIEERTVTRWSPEQCREN
         VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Subjt:  SVND--NGSEFVSPSCLDSYSIEERTVTRWSPEQCREN

AT5G60230.1 splicing endonuclease 21.8e-6854.01Show/hide
Query:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS
          N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   D     RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDN--GSEFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G +     CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSEFVSPSCLDSYSIEERTVTRWSPEQCREN

AT5G60230.2 splicing endonuclease 26.3e-6954.2Show/hide
Query:  SMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD
        SMAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     
Subjt:  SMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD

Query:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL
        C  N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   D     RLRVWSD  C +RL GSVAKTLL L
Subjt:  CEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNDN--GSEFVSPSCLDSYSIEERTVTRWSPEQCREN
         VN N  G +     CL+++++EE+T++RWSPE  RE+
Subjt:  SVNDN--GSEFVSPSCLDSYSIEERTVTRWSPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCCAACTATTTTCCTTTTTCTTTTAACTTACTCTCCCCGCCGCCGCACTCTTCTTTTTCTCTTTTATCTCGCGTTGTTGCCGTCGATTTCACTGTTTCACCTCC
GGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATCTCCAGTACTGTACTTCACCTTCAATCTTCTTTCATACAGTCCAACG
CTCGAGGATTATTATCTGGTTCTACCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTTGGCCGACAAATTCTTACTGCTGAGAAGGAC
AAACAATGGTTTCAATTTGGCATGGAGGAGGCCTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAATGAATTTTCAAGAGCTTTG
GCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATT
TTGTGGCGTATCGTCATCATCCGGCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTCTGAAGGAAGAGACAGTAATGGAAATGGGCGATTGAGGGTTTGGTCTGAT
TTTCTTTGCACAATTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTTCCGTCAATGATAATGGAAGTGAATTTGTTTCTCCTTCGTGTTTGGACAGTTACTC
CATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAGAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ACAAAATTTAGATCACTGCATCATTTTAGATTATCGCCACACATTTGTATTCTTAATTTTTGTTAGAAATTGTAAGTATGTAGTTAGAGGTTGGGAGGTTCAACCACCAC
TCTCCAATGTCAAATAATATCTTTATTCTTTTAATTTTATCTAATCTATGATCTCCAACTATTTTCCTTTTTCTTTTAACTTACTCTCCCCGCCGCCGCACTCTTCTTTT
TCTCTTTTATCTCGCGTTGTTGCCGTCGATTTCACTGTTTCACCTCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCAT
CTCCAGTACTGTACTTCACCTTCAATCTTCTTTCATACAGTCCAACGCTCGAGGATTATTATCTGGTTCTACCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTC
TTAATCGCACTTGTTTTGGCCGACAAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCCTTTTACTTGTCCTATCACTTGAATTGCCTC
AAAATTGTCGATGGACAAGACTGTGAAATGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCG
ATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGGCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTCTG
AAGGAAGAGACAGTAATGGAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTTCCGTCAAT
GATAATGGAAGTGAATTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAGAAGT
GTGAAATAGACCAACTTTTAAGGTATTCTCTTATGAAGATGAACTATGTGCGGAAAATAGAAACCAAGAATTTTGAAGATAATGTAAATGATGCAAGAAAAGGAGGCAGA
GGTTTTAACATGTCAAACACTGCAACACGAGGAACTACTGAGAAATCATATCCGTTTCAATAGAGGTTACTACCATTATGTTATATTGCCATGGAAGGAAAACCGTGAGA
ATATGACTAGGAGGATGGTCTCCTCCATTGTTGTGTTGCTACAATCAAGACATTAGTGGTTTCAATCCTCCTAACTCAAAAGGAAGAAGATTGTTGTGTTATTCATGCTA
ACCAACAATATTTCTTGGCCACTCACGCTTCAATTTATCGGCTTTATTTATTAGGTGAGATGTCATTTTATCTTAAACATGAAAAGAATCTTATGAGTATGTGCATTAAA
GATTTTGATAGAAGAGTAGAGAAATATGATTATGGTAGATTATTCACAACAATCAAAGAGTTTTCACATTATTTAACGGAATAATTATTGTAGGGTG
Protein sequenceShow/hide protein sequence
MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKD
KQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSD
FLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV