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IVF0000290 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000290
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:24053302..24053991
RNA-Seq ExpressionIVF0000290
SyntenyIVF0000290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060795.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.74e-2765.62Show/hide
Query:  GRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAVVDGRTQAGGWNSAYSGCGTSGWATVWRSMCGGCGAN
        GR SK  S AR  C GRVRVCDSG GG A+L FAGFDD  STCDGVA++AA + ADFVA VDGRT+  GWNSA      SGWAT+W S CGGC A+
Subjt:  GRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAVVDGRTQAGGWNSAYSGCGTSGWATVWRSMCGGCGAN
TrEMBL top hitse value%identityAlignment
A0A5A7V4I8 Ty3-gypsy retrotransposon protein3.4e-2365.62Show/hide
Query:  GRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAVVDGRTQAGGWNSAYSGCGTSGWATVWRSMCGGCGAN
        GR SK  S AR  C GRVRVCDSG GG A+L FAGFDD  STCDGVA++AA + ADFVA VDGRT+  GWNSA      SGWAT+W S CGGC A+
Subjt:  GRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAVVDGRTQAGGWNSAYSGCGTSGWATVWRSMCGGCGAN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTTCGGCAGGCAGCTCACGCGTGCAGAACGGCTCAACAGGCGTTGGCGTGGAGCGATCGACTCACGGAGAAGGGGCGCGGGTCAAAAATCGGGTCGGTGGCGAG
GCACAGCTGTTCAGGTCGGGTACGGGTGTGCGATTCAGGTTACGGAGGCGTGGCGCGGCTGTGCTTCGCAGGCTTCGACGATTGGCGCTCGACGTGCGACGGCGTGGCTA
AGCAAGCGGCTGACGACGCGGCTGATTTCGTGGCTGTAGTTGACGGGAGAACTCAAGCGGGCGGCTGGAACTCGGCGTACAGCGGCTGCGGAACGAGCGGTTGGGCGACT
GTCTGGCGCTCGATGTGCGGTGGCTGCGGGGCGAACGACTGGGCGACGATCTGGCGCTCGGCGTGCAGTGGCTGTGGAGCGACCGGTCGGCGATGGTGGTGCATGCAGCG
GCTAGGGTTTCCTTTCCCCCTCTTCTCTTTCTTTTTTTCTCTCTCTTTTGCACGGGTTCCAAGGCTCATTTATAGAAAAGATAACCCAATATTAAATTCCCTTTTCCCTT
TCCTTATTATATTTCCAAAACAACCCAACCTCCTCTCTCCTCATCTAAATCTCACCAAACTTTCCTTTTTCTCTTCTCCTTTTTTTTCTTTCCCAAATAAAACTCATAAT
CTCTCCCCTCAACCAACCAAACATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGTTCGGCAGGCAGCTCACGCGTGCAGAACGGCTCAACAGGCGTTGGCGTGGAGCGATCGACTCACGGAGAAGGGGCGCGGGTCAAAAATCGGGTCGGTGGCGAG
GCACAGCTGTTCAGGTCGGGTACGGGTGTGCGATTCAGGTTACGGAGGCGTGGCGCGGCTGTGCTTCGCAGGCTTCGACGATTGGCGCTCGACGTGCGACGGCGTGGCTA
AGCAAGCGGCTGACGACGCGGCTGATTTCGTGGCTGTAGTTGACGGGAGAACTCAAGCGGGCGGCTGGAACTCGGCGTACAGCGGCTGCGGAACGAGCGGTTGGGCGACT
GTCTGGCGCTCGATGTGCGGTGGCTGCGGGGCGAACGACTGGGCGACGATCTGGCGCTCGGCGTGCAGTGGCTGTGGAGCGACCGGTCGGCGATGGTGGTGCATGCAGCG
GCTAGGGTTTCCTTTCCCCCTCTTCTCTTTCTTTTTTTCTCTCTCTTTTGCACGGGTTCCAAGGCTCATTTATAGAAAAGATAACCCAATATTAAATTCCCTTTTCCCTT
TCCTTATTATATTTCCAAAACAACCCAACCTCCTCTCTCCTCATCTAAATCTCACCAAACTTTCCTTTTTCTCTTCTCCTTTTTTTTCTTTCCCAAATAAAACTCATAAT
CTCTCCCCTCAACCAACCAAACATCTTTAA
Protein sequenceShow/hide protein sequence
MTVRQAAHACRTAQQALAWSDRLTEKGRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAVVDGRTQAGGWNSAYSGCGTSGWAT
VWRSMCGGCGANDWATIWRSACSGCGATGRRWWCMQRLGFPFPLFSFFFSLSFARVPRLIYRKDNPILNSLFPFLIIFPKQPNLLSPHLNLTKLSFFSSPFFSFPNKTHN
LSPQPTKHL