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IVF0000296 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000296
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:13279226..13279651
RNA-Seq ExpressionIVF0000296
SyntenyIVF0000296
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]6.39e-88100Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KSKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
        KSKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
Subjt:  KSKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC

XP_022152309.1 uncharacterized protein LOC111020057 [Momordica charantia]5.68e-4261.38Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        M QK QALRQGNKSVEDYY E+DTL+DR+DLDE+M+ +MA+FLN LNKEI DKVDLQPY DIEEMLHLAIK+E+Q   +  RY+S K  S+ +++WKK++
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KSKY----RSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
        K+         +     S  EKGESSMKGK K +E KER RDIKC
Subjt:  KSKY----RSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC

XP_022158803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]1.87e-3962.68Show/hide
Query:  QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKS
        QK Q LRQG+KSVEDYY EMDTL++RLDL+E+ME +MA+FLNGLNKEI DKVDLQPY +IEEMLHLAIK+EKQ   R  RY++ KP S  +S+WK ++KS
Subjt:  QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKS

Query:  ---KYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
           K R+R+ +      EKGESS KGK K   +  RNRDIKC
Subjt:  ---KYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC

XP_023530046.1 uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo]5.76e-4059.31Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        M QK QAL+QG KSVEDYY EMDTL+DRLDLDE+ME +MA+FLNGLN EI DK DLQPYS+IEE+LH+AIK+E+Q   R  RY+S K   +  S+WKK++
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KS-KYRSRDKFVSGSLK---EKGESSMKGKSKFEESKERNRDIKC
        K+  Y+ R+  ++   +   EKGESS  GK K E+S  RNRD+KC
Subjt:  KS-KYRSRDKFVSGSLK---EKGESSMKGKSKFEESKERNRDIKC

XP_038887118.1 uncharacterized protein K02A2.6-like [Benincasa hispida]3.01e-4977.31Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        M Q+ QALRQGNKSVEDYY EMD L+DRLDLDE+MET+MA+FLNGLNKEI DKVDLQPY DIEEMLHLAIKVEK  ST+  RY S KPSSS NSSWK EN
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KSKYRSRDKFVSGSLKEKG
        +S +RSRDKFV  + KEKG
Subjt:  KSKYRSRDKFVSGSLKEKG

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein2.8e-68100Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KSKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
        KSKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
Subjt:  KSKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC

A0A6J1DFN2 uncharacterized protein LOC1110200576.9e-3561.38Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        M QK QALRQGNKSVEDYY E+DTL+DR+DLDE+M+ +MA+FLN LNKEI DKVDLQPY DIEEMLHLAIK+E+Q   +  RY+S K  S+ +++WKK++
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KSK----YRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
        K+         +     S  EKGESSMKGK K +E KER RDIKC
Subjt:  KSK----YRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252681.3e-3363.38Show/hide
Query:  QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENK-
        QK Q LRQG+KSVEDYY EMDTL++RLDL+E+ME +MA+FLNGLNKEI DKVDLQPY +IEEMLHLAIK+EKQ   R  RY S KP S  +S+WK ++K 
Subjt:  QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENK-

Query:  --SKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC
          SK R+R+ +      EKGESS KGK K   +  RNRDIKC
Subjt:  --SKYRSRDKFVSGSLKEKGESSMKGKSKFEESKERNRDIKC

A0A6J1EVV9 uncharacterized protein LOC1114364632.9e-3359.31Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        M QK QAL+QG KSVEDYY EMDTL+DRL+LDE+ME +MA+FLNGLN EI DK DLQPYS+IEE+LH+AIK+E+Q   R  RY+S K   +  S+WKKE+
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KS-KYRSRDKFVSGSLK---EKGESSMKGKSKFEESKERNRDIKC
        K+  Y+ R++ ++   +   EKGESS  GK K E+S  RNRD+KC
Subjt:  KS-KYRSRDKFVSGSLK---EKGESSMKGKSKFEESKERNRDIKC

A0A6J1G2Q3 uncharacterized protein LOC1114502862.9e-3359.31Show/hide
Query:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN
        M QK QAL+QG KSVEDYY EMDTL+DRL+LDE+ME +MA+FLNGLN EI DK DLQPYS+IEE+LH+AIK+E+Q   R  RY+S K   +  S+WKK++
Subjt:  MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKEN

Query:  KS-KYRSRDKFVSGSLK---EKGESSMKGKSKFEESKERNRDIKC
        KS  Y+ R++ ++   +   EKGESS  GK K E+S  RNRD+KC
Subjt:  KS-KYRSRDKFVSGSLK---EKGESSMKGKSKFEESKERNRDIKC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACAAAAGTTTCAAGCATTGAGGCAAGGCAACAAGTCGGTGGAAGACTACTACAACGAGATGGACACTTTGATTGATCGACTTGATCTTGATGAAGAAATGGAGAC
TATCATGGCACAATTTTTGAATGGCCTCAACAAGGAGATTGTTGACAAGGTTGATTTGCAGCCGTATTCTGACATAGAGGAGATGTTGCATCTTGCTATCAAAGTTGAAA
AACAATTTAGTACAAGAATAACAAGGTACAACTCTTATAAACCTTCTTCTTCCTTCAACTCATCATGGAAAAAGGAGAACAAAAGTAAATATAGAAGTAGAGATAAGTTT
GTGAGTGGAAGTCTTAAAGAAAAAGGTGAGTCTTCTATGAAAGGAAAGTCCAAATTCGAAGAGTCTAAGGAGAGAAATAGAGATATTAAGTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACAAAAGTTTCAAGCATTGAGGCAAGGCAACAAGTCGGTGGAAGACTACTACAACGAGATGGACACTTTGATTGATCGACTTGATCTTGATGAAGAAATGGAGAC
TATCATGGCACAATTTTTGAATGGCCTCAACAAGGAGATTGTTGACAAGGTTGATTTGCAGCCGTATTCTGACATAGAGGAGATGTTGCATCTTGCTATCAAAGTTGAAA
AACAATTTAGTACAAGAATAACAAGGTACAACTCTTATAAACCTTCTTCTTCCTTCAACTCATCATGGAAAAAGGAGAACAAAAGTAAATATAGAAGTAGAGATAAGTTT
GTGAGTGGAAGTCTTAAAGAAAAAGGTGAGTCTTCTATGAAAGGAAAGTCCAAATTCGAAGAGTCTAAGGAGAGAAATAGAGATATTAAGTGCTAA
Protein sequenceShow/hide protein sequence
MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKF
VSGSLKEKGESSMKGKSKFEESKERNRDIKC