CuGenDBv2

Gene ID	IVF0000343
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein LTV1-like protein
Genome location	chr12:8561829..8562363
RNA-Seq Expression	IVF0000343
Synteny	IVF0000343
Gene Ontology terms	GO:0000056 - ribosomal small subunit export from nucleus (biological process) GO:0042274 - ribosomal small subunit biogenesis (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0016020 - membrane (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR007307 - Low temperature viability protein Ltv1

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032612.1 protein LTV1-like protein [Cucumis melo var. makuwa]

4.27e-71

100

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Query:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV
        MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV

Query:  DTCNYGDS
        DTCNYGDS
Subjt:  DTCNYGDS

KAA0060375.1 protein LTV1-like protein [Cucumis melo var. makuwa]

7.66e-61

96.04

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Query:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV
        MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV

Query:  D
        D
Subjt:  D

XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]

1.14e-45

82.35

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Query:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV
        MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN VP DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNV
Subjt:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV

Query:  VD
        VD
Subjt:  VD

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]

2.45e-42

78.43

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Query:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV
        MQ  G+VGGTSSL +NVR++ILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN VP DEKAYDASRMIVSK+N DA+ N Y+ ASKIVGVRVQNV
Subjt:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV

Query:  VD
        VD
Subjt:  VD

XP_038898842.1 protein LTV1 homolog [Benincasa hispida]

5.05e-39

74.51

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Query:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV
        ++ R EVGGT+ L +NVRREILEL FPDDGYNYLL+LR I+NTG GS  YQNPKAKLN VP DEKAYDASR+IVSK N DA+ N+Y+ ASK VGVRVQNV
Subjt:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV

Query:  VD
        VD
Subjt:  VD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L517 Uncharacterized protein

6.9e-35

78.43

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Query:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV
        MQ  G+VGGTSSL +NVR++ILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN VP DEKAYDASRMIVSK+N DA+ N Y+ ASKIVGVRVQNV
Subjt:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV

Query:  VD
        VD
Subjt:  VD

A0A1S3BKZ8 protein LTV1 homolog

1.5e-37

82.35

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Query:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV
        MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN VP DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNV
Subjt:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV

Query:  VD
        VD
Subjt:  VD

A0A5A7SNI8 Protein LTV1-like protein

1.5e-53

100

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Query:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV
        MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV

Query:  DTCNYGDS
        DTCNYGDS
Subjt:  DTCNYGDS

A0A5A7V3C9 Protein LTV1-like protein

5.1e-46

96.04

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Query:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV
        MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVV

Query:  D
        D
Subjt:  D

A0A5D3CI19 Protein LTV1-like protein

1.5e-37

82.35

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Query:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV
        MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN VP DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNV
Subjt:  MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNV

Query:  VD
        VD
Subjt:  VD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G49990.1 unknown protein

1.0e-19

55.56

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Query:  NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVS-KVNFDANVN--VYEAASKIVGVRVQNVVD
        +VR+EILEL +PDDGYNYL +LR I+NTG GS  Y NPK ++  +P D KAYDASR+ +S  VN + N N  +Y  ASK V V+VQ  +D
Subjt:  NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVS-KVNFDANVN--VYEAASKIVGVRVQNVVD

Sequences

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CDS sequence

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ATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACTGAAAAATGTAAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGTTGTATCTTCG
GGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAAAAGGCTTATGACGCCTCCAGAATGATTGTTT
CTAAAGTGAACTTTGATGCCAATGTGAATGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGATACATGTAATTATGGTGATAGCTAA

mRNA sequence

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Protein sequence

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MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS

IVF0000343 (gene) of Melon (IVF77) v1 genome