CuGenDBv2

Gene ID	IVF0000452
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LTV1 homolog
Genome location	chr05:24310506..24310940
RNA-Seq Expression	IVF0000452
Synteny	IVF0000452
Gene Ontology terms	GO:0000056 - ribosomal small subunit export from nucleus (biological process) GO:0006413 - translational initiation (biological process) GO:0042274 - ribosomal small subunit biogenesis (biological process) GO:0050790 - regulation of catalytic activity (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0005085 - guanyl-nucleotide exchange factor activity (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function) GO:0031369 - translation initiation factor binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33900.1 hypothetical protein [Cucumis melo subsp. melo]

4.32e-71

98.11

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Query:  MFEECFNWFDRTHTFDASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFI
        MFEECFNWFDRTHTFDASGSACYDEDPNSIFA ASKDYDEEENGGFGSSMQSRGEVGG SSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFI
Subjt:  MFEECFNWFDRTHTFDASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFI

Query:  RTPRPS
        RTPRPS
Subjt:  RTPRPS

KAA0063639.1 translation initiation factor eIF-2B subunit epsilon isoform X1 [Cucumis melo var. makuwa]

2.81e-52

100

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFIRTPRPS
        DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFIRTPRPS
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFIRTPRPS

XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]

3.13e-31

91.3

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI
        DASGSACYDEDPNSIFA AS+DYDEEENGGFGSSMQSRGEVGGTSS PENVRREILEL FP+DGYNYL+
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]

2.77e-28

84.06

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI
        DASGSACYDEDPNSIFA AS+DYDEEENGGFGSSMQ  G+VGGTSS PENVR++ILEL FP+DGYNYL+
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI

XP_038898842.1 protein LTV1 homolog [Benincasa hispida]

6.00e-25

76.81

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI
        DASGSACYDEDPNSIFA A +DYD+E+NGGFG S++ R EVGGT+  PENVRREILEL FP+DGYNYL+
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L517 Uncharacterized protein

2.7e-23

84.06

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI
        DASGSACYDEDPNSIFA AS+DYDEEENGGFGSSMQ  G+VGGTSS PENVR++ILEL FP+DGYNYL+
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI

A0A1S3BKZ8 protein LTV1 homolog

9.7e-26

91.3

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI
        DASGSACYDEDPNSIFA AS+DYDEEENGGFGSSMQSRGEVGGTSS PENVRREILEL FP+DGYNYL+
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI

A0A5A7VDS3 eIF-2B GDP-GTP exchange factor subunit epsilon

6.1e-44

100

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFIRTPRPS
        DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFIRTPRPS
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFIRTPRPS

A0A5D3CI19 Protein LTV1-like protein

9.7e-26

91.3

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Query:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI
        DASGSACYDEDPNSIFA AS+DYDEEENGGFGSSMQSRGEVGGTSS PENVRREILEL FP+DGYNYL+
Subjt:  DASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSS-PENVRREILELEFPEDGYNYLI

E5GBQ8 Uncharacterized protein

2.5e-53

98.11

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Query:  MFEECFNWFDRTHTFDASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFI
        MFEECFNWFDRTHTFDASGSACYDEDPNSIFA ASKDYDEEENGGFGSSMQSRGEVGG SSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFI
Subjt:  MFEECFNWFDRTHTFDASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFI

Query:  RTPRPS
        RTPRPS
Subjt:  RTPRPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTCGAGGAATGTTTCAACTGGTTTGACAGAACACACACATTCGATGCTTCCGGTTCTGCTTGCTACGATGAAGATCCTAACTCAATATTTGCCGGTGCTTCTAAGGA
TTATGATGAGGAAGAGAATGGAGGTTTTGGGTCATCTATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACCGGAAAATGTTAGAAGAGAGATTTTGGAGCTTGAGT
TCCCTGAAGATGGTTACAATTATTTAATTTTCTGTATCTTCGGGAGATTAAGAATACTGTTGGTGGTTCGACATTTTATCAGAACCCCGAGGCCAAGCTGA

mRNA sequence

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Protein sequence

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MFEECFNWFDRTHTFDASGSACYDEDPNSIFAGASKDYDEEENGGFGSSMQSRGEVGGTSSPENVRREILELEFPEDGYNYLIFCIFGRLRILLVVRHFIRTPRPS

IVF0000452 (gene) of Melon (IVF77) v1 genome