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IVF0000475 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000475
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRep_fac-A_C domain-containing protein
Genome locationchr11:25574713..25577607
RNA-Seq ExpressionIVF0000475
SyntenyIVF0000475
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037314.1 uncharacterized protein E6C27_scaffold3G00270 [Cucumis melo var. makuwa]5.03e-102100Show/hide
Query:  MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVS
        MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVS
Subjt:  MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVS

Query:  EILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        EILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  EILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

KGN46888.2 hypothetical protein Csa_020864 [Cucumis sativus]4.96e-10796.25Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNPSS LCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

XP_008465398.1 PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]8.23e-113100Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]2.01e-9889.81Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEIL GEMFR+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV

XP_031742644.1 uncharacterized protein LOC101220454 [Cucumis sativus]5.17e-10491.67Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNPSS LCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFA--------AETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFA        AETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFA--------AETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

TrEMBL top hitse value%identityAlignment
A0A0A0KEN7 Uncharacterized protein1.8e-7996.15Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNP SSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A1S3CNQ4 uncharacterized protein LOC1035030283.3e-86100Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

A0A5A7T1G5 Uncharacterized protein4.4e-78100Show/hide
Query:  MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVS
        MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVS
Subjt:  MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVS

Query:  EILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        EILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  EILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X11.5e-7589.81Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEIL GEMFR+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X21.5e-7589.81Show/hide
Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEIL GEMFR+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3.8e-4252.87Show/hide
Query:  TTMCAVIAMDYTNFCYRVCSICERTLPVN----PSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPF
        T +C ++A+D T++CYRVCS C+R LP +     SSS CKFC        S   K ++R+LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P 
Subjt:  TTMCAVIAMDYTNFCYRVCSICERTLPVN----PSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPF

Query:  AAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        AA  V+++  GEM R+T+++P+N NAQH RV  +VPL S  QPAI+ LR++   N++
Subjt:  AAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTGTGTTCTATCTGTGAGAGAACACTTCCCGTTAACCC
ATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCTTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGGAAGTAC
AAACTGTAATATGCTTTGATAGGGTTGCTAAGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAA
ATTCTGGTGGGAGAGATGTTTAGGATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGC
GATTATTAGACTGAGGGAATTGTATGGAGTAAATTCCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATTTCGTCCTCTCGACCCTTTCCCTCCGGACAGTGTGAAGAACAGTGTTGTATTTTCCGTTTTCAGGAACGAAAGCAGTTTCCTTTAATGGAAAATGGTAAGCCAATAAC
AACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTGTGTTCTATCTGTGAGAGAACACTTCCCGTTAACCCATCTTCTTCTCTTTGCAAATTCT
GCAACTTCAACGCCTTTAATCCCGGTTCTTCTTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGGAAGTACAAACTGTAATATGCTTTGATAGG
GTTGCTAAGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGTGGGAGAGATGTTTAG
GATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGCGATTATTAGACTGAGGGAATTGT
ATGGAGTAAATTCCAATTGATAACTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAATAA
CCTAATCCCATCCCATCCCAAGATTGTTTGCATCCTTTTCTTTCATTTAGAGTGGACAATATTTTGTTATTTGATGTGATTTTGTGTGCAGTGGAGAGGATTATTGTAAC
TTCAAAGG
Protein sequenceShow/hide protein sequence
MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSE
ILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN