CuGenDBv2

Gene ID	IVF0000502
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:2767134..2767421
RNA-Seq Expression	IVF0000502
Synteny	IVF0000502
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

1.07e-52

97.89

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVPFQVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

KAA0038956.1 copia protein [Cucumis melo var. makuwa]

9.83e-54

96.84

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVP QVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.43e-56

97.89

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVPFQVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.19e-52

97.89

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVPFQVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]

4.81e-55

95.79

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVP QVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDA+LNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT1 Putative copia-type polyprotein

6.4e-45

97.89

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVPFQVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

A0A5A7TA92 Copia protein

3.2e-44

96.84

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVP QVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.4e-45

97.89

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVPFQVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.4e-45

97.89

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVPFQVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.4e-45

97.89

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
        M NNNLVPFQVPRLTKENYSSWCIRMK LLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

4.7e-24

52.17

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Query:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTA
        M +NN VPFQVP LTK NY +W +RMK +LG+ DVW+IV  G+ EPE++ +L+Q Q++ L+++RK+D+KAL +I+Q +D++ FEK+  AT+A
Subjt:  MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTA

Sequences

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CDS sequence

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ATGACAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAACTCTACTTGGTTCACAAGATGTGTGGGA
CATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTGAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGGAAAAAAGATCAAAAGGCCCTCACCATAA
TTCATCAAGCCATTGATGATAACAATTTTGAGAAAATTTCTGGAGCAACTACTGCATATCAAGCATGA

mRNA sequence

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Protein sequence

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MTNNNLVPFQVPRLTKENYSSWCIRMKTLLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA

IVF0000502 (gene) of Melon (IVF77) v1 genome