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IVF0000544 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000544
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr08:22128631..22128957
RNA-Seq ExpressionIVF0000544
SyntenyIVF0000544
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]4.34e-3769.72Show/hide
Query:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR
        MSD N+ E P MYSQGI +SQ++V TS+PA TS+GR  SSESKR +GSQ EGELDVI+MAL+C NDQLRTI EW     AN+T VRQEFL LL EMPDL 
Subjt:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR

Query:  SLDRMLCQR
        SLDR LCQR
Subjt:  SLDRMLCQR

KAA0041835.1 retrotransposon protein [Cucumis melo var. makuwa]9.52e-6198.95Show/hide
Query:  QGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRSLDRMLCQR
        +GIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRSLDRMLCQR
Subjt:  QGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRSLDRMLCQR

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]2.99e-4471.3Show/hide
Query:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS
        M D NEE PSMYSQGI MSQ +V  SRP+HTS GR  SS SKR + SQ +GE++VIHMA+ECTNDQLRTI+EW A  LANDTHVRQE L LLH MP+L S
Subjt:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS

Query:  LDRMLCQR
        LDR+LCQR
Subjt:  LDRMLCQR

KAA0050806.1 retrotransposon protein [Cucumis melo var. makuwa]2.36e-3864.81Show/hide
Query:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS
        MSD NEE  S+YSQGI MSQ +V  S+PAHTSN RA SS  KR +GSQ +GE+ VIHMAL+C NDQL+ I EW A  LAN+THV QEF+ LL EM +L +
Subjt:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS

Query:  LDRMLCQR
        LDR LCQR
Subjt:  LDRMLCQR

TYK28464.1 retrotransposon protein [Cucumis melo var. makuwa]6.99e-3768.22Show/hide
Query:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR
        +SD NE E PSMYSQ I MS+++V  SRPA  SNGR  SS SKR +GS+ EGELDVIHMALE TNDQLRTI EW    LAN+T V +EFL LL EMPDL 
Subjt:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR

Query:  SLDRMLC
        SLDR LC
Subjt:  SLDRMLC

TrEMBL top hitse value%identityAlignment
A0A5A7TK69 Retrotransposon protein1.7e-4698.95Show/hide
Query:  QGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRSLDRMLCQR
        +GIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRSLDRMLCQR
Subjt:  QGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRSLDRMLCQR

A0A5A7U4I8 Retrotransposon protein9.9e-3471.3Show/hide
Query:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS
        M D NEE PSMYSQGI MSQ +V  SRP+HTS GR  SS SKR + SQ +GE++VIHMA+ECTNDQLRTI+EW A  LANDTHVRQE L LLH MP+L S
Subjt:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS

Query:  LDRMLCQR
        LDR+LCQR
Subjt:  LDRMLCQR

A0A5A7U9D5 Retrotransposon protein5.6e-2964.81Show/hide
Query:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS
        MSD NEE  S+YSQGI MSQ +V  S+PAHTSN RA SS  KR +GSQ +GE+ VIHMAL+C NDQL+ I EW A  LAN+THV QEF+ LL EM +L +
Subjt:  MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRS

Query:  LDRMLCQR
        LDR LCQR
Subjt:  LDRMLCQR

A0A5D3BQI7 Retrotransposon protein1.9e-2969.72Show/hide
Query:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR
        MSD N+ E P MYSQGI +SQ++V TS+PA TS+GR  SSESKR +GSQ EGELDVI+MAL+C NDQLRTI EW     AN+T VRQEFL LL EMPDL 
Subjt:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR

Query:  SLDRMLCQR
        SLDR LCQR
Subjt:  SLDRMLCQR

A0A5D3DY31 Retrotransposon protein2.4e-2768.22Show/hide
Query:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR
        +SD NE E PSMYSQ I MS+++V  SRPA  SNGR  SS SKR +GS+ EGELDVIHMALE TNDQLRTI EW    LAN+T V +EFL LL EMPDL 
Subjt:  MSDRNE-ELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLR

Query:  SLDRMLC
        SLDR LC
Subjt:  SLDRMLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGATAGGAACGAGGAGTTGCCATCCATGTACAGTCAGGGGATTTACATGTCTCAGAATAATGTATGCACATCACGACCTGCTCACACATCAAACGGTAGAGCTGA
ATCGAGCGAATCAAAGAGAAATAAGGGAAGCCAATGGGAGGGTGAGCTTGACGTCATACATATGGCCTTGGAGTGTACCAATGACCAACTCAGGACGATTTCTGAGTGGT
CTGCACACACGCTTGCTAATGACACCCATGTTCGCCAAGAATTTTTACACCTATTGCATGAGATGCCCGACCTAAGAAGTTTGGATAGGATGTTGTGCCAAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGATAGGAACGAGGAGTTGCCATCCATGTACAGTCAGGGGATTTACATGTCTCAGAATAATGTATGCACATCACGACCTGCTCACACATCAAACGGTAGAGCTGA
ATCGAGCGAATCAAAGAGAAATAAGGGAAGCCAATGGGAGGGTGAGCTTGACGTCATACATATGGCCTTGGAGTGTACCAATGACCAACTCAGGACGATTTCTGAGTGGT
CTGCACACACGCTTGCTAATGACACCCATGTTCGCCAAGAATTTTTACACCTATTGCATGAGATGCCCGACCTAAGAAGTTTGGATAGGATGTTGTGCCAAAGGTAG
Protein sequenceShow/hide protein sequence
MSDRNEELPSMYSQGIYMSQNNVCTSRPAHTSNGRAESSESKRNKGSQWEGELDVIHMALECTNDQLRTISEWSAHTLANDTHVRQEFLHLLHEMPDLRSLDRMLCQR