| GenBank top hits | e value | %identity | Alignment |
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| KAA0065060.1 RNA polymerase sigma factor sigC [Cucumis melo var. makuwa] | 0.0 | 100 | Show/hide |
Query: KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILME
KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILME
Subjt: KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILME
Query: NLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVAS
NLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVAS
Subjt: NLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVAS
Query: RPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTN
RPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTN
Subjt: RPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTN
Query: SLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIAR
SLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIAR
Subjt: SLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIAR
Query: ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKE
ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKE
Subjt: ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKE
Query: WVRKIEKKAMTKLKNEETVKNLSHYLD
WVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: WVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_004148429.2 RNA polymerase sigma factor sigC isoform X1 [Cucumis sativus] | 0.0 | 92.5 | Show/hide |
Query: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
MMGT FRPNL+WGFQIQTHSLKNSPSKLSP+ASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTS +DLLNLEEIEMNSGAKSL +HY
Subjt: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
Query: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
GIKSTRPSKVEDNFSS TS+PTGKASPFGILMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LP+E GEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
Query: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
NDQN +VTVYS K+AGRRSVKKRAMDNADK+ASR L TRAVKEKIH ST+FSRKKSSNSSKRRL+VA NEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFG FCRDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
IP SLTKAINQIQKARKVLN GRRYSDDDIARATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTAD SIQSPEETVKR+LMKKDIFNILQ LE
Subjt: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL+DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 0.0 | 99.82 | Show/hide |
Query: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
Subjt: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
Query: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
Query: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Subjt: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR+LMKKDIFNILQGLE
Subjt: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 0.0 | 85.89 | Show/hide |
Query: MGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYG
MGT FRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFSS CEEGE+I RE LKTYTCLSEAPQT D LL+LEE E+NSGAKSLS LHYG
Subjt: MGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYG
Query: IKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPVEDGEDHNVNQKT
K++ PSKVEDNF S TS+PTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+E G DHNVNQKT
Subjt: IKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPVEDGEDHNVNQKT
Query: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPLATRA KEK SS RKK+SNS KRR +VARNEAEMSTG+KVVANLERIRETLEKESGR ASM
Subjt: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWA+A+S+DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
IPWSLTKAINQIQKARK LN GRRYSDDD+A+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR LMKKDIFN+L+ LE
Subjt: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETV+NLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 0.0 | 89.01 | Show/hide |
Query: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
MMGT FRPNLKWGFQIQTHS K SPSKL PYASKGREAAFNSGRLSFFSSI EEGESI RETLKTYTCLSEAPQTS DDLLNLEEIEMN GAKSLS LHY
Subjt: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
Query: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVE----DGEDHNV
GIK+T PSKVEDNFSS TS P+GKASPFG+LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+E D DHNV
Subjt: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVE----DGEDHNV
Query: NQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGR
NQKT D+N D+ VYSGKRA RRSVKKRAMD+ADKV S+PLATRA KEKIHSS I SRKK+SNS KRRL++ARNEAEMSTG+KVVANLERIRETLEKESGR
Subjt: NQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGR
Query: IASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS
+ SMSCWA AA VDIKDL+KQLQFGWFC+DELLRSTNSL+LFLA+KYRCSGLPMEDLVQAG+LGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN+
Subjt: IASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS
Query: RGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNIL
RGIQIPWSLTKAINQIQKARKVLN GGRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPEETVK++LMKKDIFN+L
Subjt: RGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNIL
Query: QGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
+GLESRERQVLVLRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKL++EETV+N SHYLD
Subjt: QGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0LLW1 Uncharacterized protein | 3.1e-288 | 92.5 | Show/hide |
Query: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
MMGT FRPNL+WGFQIQTHSLKNSPSKLSP+ASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTS +DLLNLEEIEMNSGAKSL +HY
Subjt: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
Query: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
GIKSTRPSKVEDNFSS TS+PTGKASPFGILMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LP+E GEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
Query: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
NDQN +VTVYS K+AGRRSVKKRAMDNADK+ASR L TRAVKEKIH ST+FSRKKSSNSSKRRL+VA NEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFG FCRDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
IP SLTKAINQIQKARKVLN GRRYSDDDIARATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTAD SIQSPEETVKR+LMKKDIFNILQ LE
Subjt: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGL+DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A1S3BBM8 RNA polymerase sigma factor sigC | 0.0e+00 | 99.82 | Show/hide |
Query: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
Subjt: MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHY
Query: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
Subjt: GIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKT
Query: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Subjt: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR+LMKKDIFNILQGLE
Subjt: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A5A7VCX9 RNA polymerase sigma factor sigC | 3.2e-293 | 99.81 | Show/hide |
Query: SKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILM
+KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILM
Subjt: SKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILM
Query: ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVA
ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVA
Subjt: ENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVA
Query: SRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRST
SRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRST
Subjt: SRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRST
Query: NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIA
NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIA
Subjt: NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIA
Query: RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSK
RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSK
Subjt: RATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSK
Query: EWVRKIEKKAMTKLKNEETVKNLSHYLD
EWVRKIEKKAMTKLKNEETVKNLSHYLD
Subjt: EWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 5.1e-267 | 85.89 | Show/hide |
Query: MGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYG
MGT FRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFSS CEEGE+I RE LKTYTCLSEAPQT D LL+LEE E+NSGAKSLS LHYG
Subjt: MGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYG
Query: IKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPVEDGEDHNVNQKT
K++ PSKVEDNF S TS+PTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+E G DHNVNQKT
Subjt: IKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPVEDGEDHNVNQKT
Query: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPLATRA KEK S SRKK+SNS KRR +VARNEAEMSTG+KVVANLERIRETLEKESGR ASM
Subjt: NDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWA+A+S+DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
IPWSLTKAINQIQKARK LN GRRYSDDD+A+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR LMKKDIFN+L+ LE
Subjt: IPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
SRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETV+NLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 3.3e-266 | 85.59 | Show/hide |
Query: MGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLE--EIEMNSGAKSLSSLH
MGT FRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFSS CEEGE+I RE LKTYTCLSEAPQT D LL+LE E+E+NSGAKSLS LH
Subjt: MGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLE--EIEMNSGAKSLSSLH
Query: YGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPVEDGEDHNVNQ
YG K++ PSKVEDNF S TS+PTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+E G DHNVNQ
Subjt: YGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPVEDGEDHNVNQ
Query: KTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIA
KT+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPLATRA KEK S SRKK+SNS KRR +VARNEAEMSTG+KVVANLERIRETLEKESGR A
Subjt: KTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIA
Query: SMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWA+A+S+DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQG
IQIPWSLTKAINQIQKARK LN GRRYSDDD+A+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR LMKKDIFN+L+
Subjt: IQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQG
Query: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
LESRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETV+NLSHYLD
Subjt: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 6.0e-55 | 32.74 | Show/hide |
Query: TLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLATRAVKEKI-HSSTIFSRKKSSNSSKRRLVV
T S+ + DL E E+ V + + V S ++ R++ + + ++ + K S P R V +++ H+ + + +++SSK L+
Subjt: TLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLATRAVKEKI-HSSTIFSRKKSSNSSKRRLVV
Query: ARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
R E E+S GI+ + LER++ L + SGR + + WA AA VD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G E
Subjt: ARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L ++ G+ +++IA ATGL + ++ K S+DQK+G N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
Query: KYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
K E AD + E+ + +E M++D+ +L L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L YL
Subjt: KYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| O24621 RNA polymerase sigma factor sigC | 7.5e-114 | 45.82 | Show/hide |
Query: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDL-LNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETF
R SF SS+ EE ++LK C S +P T+ +++ + L++ + N G S E ++SS + + + +L +NL LEETF
Subjt: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDL-LNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETF
Query: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
+ +ERDI+LQ+ KLGA E F TCLSR +S LSD + D NQ+ V V S RR VKK+A +N D+ +S P+
Subjt: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
Query: ATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLV
R I + ++ K+R ++RNE EMSTG+K+VA++ERIR LE+ESG++AS+SCWA AA ++ K L + L +GW+CRDEL++ST SLV
Subjt: ATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLV
Query: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NQGGRRYSDDDIARA
LFLA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L + G + +D++IA+
Subjt: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NQGGRRYSDDDIARA
Query: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
TG + K+R A+ CLKVVGS+D+K+GD K++EFT DT+++SPEE V R+ ++DI ++L+GLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW
Subjt: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
Query: VRKIEKKAMTKLKNEETVKNLSHYLD
+RKIE++AM KL+++ ++L +YL+
Subjt: VRKIEKKAMTKLKNEETVKNLSHYLD
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| P26683 RNA polymerase sigma factor SigA | 4.3e-45 | 32.84 | Show/hide |
Query: DNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCR
D+A + R +K H + R + RL+ A E E++ I + LER+RE L ++ R S WAEA + + + +L G +
Subjt: DNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCR
Query: DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQG-GR
D++++S LV+ +AKKY GL +DL+Q G+LG+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K+L+Q GR
Subjt: DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQG-GR
Query: RYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEI
+ ++++IA + + K+R + ++ S++ +G + + +F ++ ++PE+ V + L+++D+ +L L RER VL LRYGL D + K+LEEI
Subjt: RYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEI
Query: GKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
G++ +V++E +R+IE KA+ KL++ L Y+
Subjt: GKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 9.6e-45 | 33.04 | Show/hide |
Query: AMDNADKVASRPLATRAVKEKIHSSTIFS--RKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG
A+D+ D V A K K+ + R + RL+ A E E++ I + LERIR+ L ++ R+ S + WA A + + +++L G
Subjt: AMDNADKVASRPLATRAVKEKIHSSTIFS--RKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG
Query: WFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQ
+D++++S LV+ +AKKY GL +DL+Q G+LG+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K+L+Q
Subjt: WFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQ
Query: G-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKS
GR+ ++++IA + + K+R + ++ S++ +G + + +F + ++PE+ V + L+++D+ +L L RER VL LRYGL D + K+
Subjt: G-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKS
Query: LEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
LEEIG+L +V++E +R+IE KA+ KL++ L Y+
Subjt: LEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| Q03066 RNA polymerase sigma-C factor | 5.8e-42 | 37.07 | Show/hide |
Query: WAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
WAE A + +++L+K G ++ ++++ LV+ +AKKY+ GL + DLVQ G LG+ + VE+FDP +G+RFSTY +WIR+ ++R +A +SR I++P
Subjt: WAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
Query: WSLTKAINQIQKA-RKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLES
+T+ +N+I+KA RK+ + GR + +D+A + +VR + S++ K+G + + E +T +PEE + RE +++D+ ++L L S
Subjt: WSLTKAINQIQKA-RKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLES
Query: RERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
RER V+++R+GL D P SL EIG+ L +S+E VR+IE KA+ KL+ + + YL+
Subjt: RERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 4.3e-56 | 32.74 | Show/hide |
Query: TLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLATRAVKEKI-HSSTIFSRKKSSNSSKRRLVV
T S+ + DL E E+ V + + V S ++ R++ + + ++ + K S P R V +++ H+ + + +++SSK L+
Subjt: TLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDN------ADKVASRPLATRAVKEKI-HSSTIFSRKKSSNSSKRRLVV
Query: ARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
R E E+S GI+ + LER++ L + SGR + + WA AA VD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G E
Subjt: ARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVE
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L ++ G+ +++IA ATGL + ++ K S+DQK+G N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL-NQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
Query: KYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
K E AD + E+ + +E M++D+ +L L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L YL
Subjt: KYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYL
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| AT1G64860.1 sigma factor A | 9.9e-29 | 30.45 | Show/hide |
Query: VARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGV
V R ++ +G+++ + R+++ L G S A + + +LQ L R++L S LV+ +A++Y G M DLVQ G +G+L+G+
Subjt: VARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGV
Query: ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLN-
E+FD +GFR STY+ +WIR+ +SR + NSR +++P L + + I+ A+ L + G S D IA + + KVR A+ + V S+D+ LN
Subjt: ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLN-
Query: ---MKYMEFTADTSIQ-SPEETVKRELMKKDIFNILQG-LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
+ + ADT ++ +P +K+++ ++ L RE++++ L YGL D + + E+I K + +S+E VR++ A+ KLK+
Subjt: ---MKYMEFTADTSIQ-SPEETVKRELMKKDIFNILQG-LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.3e-41 | 29.28 | Show/hide |
Query: RRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQK
RR+ K +D+ V + A + K+ + +K +L+ A+ EAE+ + I+ + LE+++ LE ++G ++ WAEA + L+
Subjt: RRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQK
Query: QLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKAR
+ G R++L+ + LV+ +AK+Y+ GL +DL+Q G++G+++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P ++ + ++ +AR
Subjt: QLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKAR
Query: KV-LNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMD
K + +G R S +++A G+ K+ + S+ Q + + + E T D+ I++P +V ++LM+ + N+L L +ER+++ LR+G+
Subjt: KV-LNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMD
Query: FQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
+ +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: FQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 5.3e-115 | 45.82 | Show/hide |
Query: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDL-LNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETF
R SF SS+ EE ++LK C S +P T+ +++ + L++ + N G S E ++SS + + + +L +NL LEETF
Subjt: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDL-LNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETF
Query: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
+ +ERDI+LQ+ KLGA E F TCLSR +S LSD + D NQ+ V V S RR VKK+A +N D+ +S P+
Subjt: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRA------MDNADKVASRPL
Query: ATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLV
R I + ++ K+R ++RNE EMSTG+K+VA++ERIR LE+ESG++AS+SCWA AA ++ K L + L +GW+CRDEL++ST SLV
Subjt: ATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLV
Query: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NQGGRRYSDDDIARA
LFLA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L + G + +D++IA+
Subjt: LFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVL--NQGGRRYSDDDIARA
Query: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
TG + K+R A+ CLKVVGS+D+K+GD K++EFT DT+++SPEE V R+ ++DI ++L+GLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW
Subjt: TGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
Query: VRKIEKKAMTKLKNEETVKNLSHYLD
+RKIE++AM KL+++ ++L +YL+
Subjt: VRKIEKKAMTKLKNEETVKNLSHYLD
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| AT5G13730.1 sigma factor 4 | 2.1e-34 | 30.51 | Show/hide |
Query: VYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKE---SGRIASMSCWAE
+ S KR RR ++ + + A E I + +S+ + E ++ +K A LE + ++E+ S +AS +
Subjt: VYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKE---SGRIASMSCWAE
Query: AASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSL
++ +I +K+ R+++ R LV+ +A Y+ GL ++DL+Q G++G+L+G ERFDP RG++ STY+ +WI++++ R +A SR +++P S+
Subjt: AASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSL
Query: TKAINQIQKARKVLNQGGRRY-SDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRER
+ ++ +A VL + RR S ++IA L ++ VR+A + S+D+ M E PEE VKRE MK +I +L L +RE
Subjt: TKAINQIQKARKVLNQGGRRY-SDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRER
Query: QVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHY
+VL L +GL P S EEIGK L +S+E VR+I A+ KL+N V +L Y
Subjt: QVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHY
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