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IVF0000635 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000635
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:2043503..2043823
RNA-Seq ExpressionIVF0000635
SyntenyIVF0000635
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33753.1 hypothetical protein [Cucumis melo subsp. melo]5.31e-4775Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFNDGV L DSH +DIPTMYSQGVHM  +EMFG  A Q SERRNCSSGSKRK+GS+HYEMVEVI+SAMEFGNDQLKA  D      +TEVEL A+VVKQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQA
        QDIPEL++
Subjt:  QDIPELQA

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]3.64e-4780.37Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFNDGV L DSH EDIPTMYSQGV M  DEMFGT AGQ SERRNCSS SKRK+GSQHYE VEVIRSAM+FGNDQLKAIAD     RA +VELRA VVKQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQ
        QDIP+LQ
Subjt:  QDIPELQ

KAA0063227.1 retrotransposon protein [Cucumis melo var. makuwa]1.81e-4977.06Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFND V LDDSH +DIP MYSQGVHM PDEMFG  A Q SER+NCSSGSKRK+GS+HYE VEVIRS +EFGNDQLKAIA+     RATEVELRA+VVKQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQAE
        QDIPELQ++
Subjt:  QDIPELQAE

KAA0067707.1 retrotransposon protein [Cucumis melo var. makuwa]1.74e-68100Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPE
        MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPE
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPE

Query:  LQAEIG
        LQAEIG
Subjt:  LQAEIG

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.18e-4575.23Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFND + L DSH EDIPTMYSQGVHM PDEMFG  AGQ SERRNCSS SKRKRGS+ YE VEVIRS MEFGN+QLKAIAD     RA EVE+RA+VVKQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQAE
        QDIP+L+++
Subjt:  QDIPELQAE

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI16.1e-3676.85Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFN  V LDDSH +DIP MYSQGVHM PDEMFG  AGQ SER+NCSSGSKRK+GS+HYE VEVI+SA+EFGNDQLKAIA+     RATEVELRA+V+KQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQA
        QDIPELQ+
Subjt:  QDIPELQA

A0A5A7U0H7 Retrotransposon protein6.7e-3575.23Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFND + L DSH EDIPTMYSQGVHM PDEMFG  AGQ SERRNCSS SKRKRGS+ YE VEVIRS MEFGN+QLKAIAD     RA EVE+RA+VVKQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQAE
        QDIP+L+++
Subjt:  QDIPELQAE

A0A5A7V8A4 Retrotransposon protein1.2e-3677.06Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFND V LDDSH +DIP MYSQGVHM PDEMFG  A Q SER+NCSSGSKRK+GS+HYE VEVIRS +EFGNDQLKAIA+     RATEVELRA+VVKQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQAE
        QDIPELQ++
Subjt:  QDIPELQAE

A0A5A7VKJ5 Retrotransposon protein2.3e-51100Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPE
        MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPE
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPE

Query:  LQAEIG
        LQAEIG
Subjt:  LQAEIG

A0A5D3CVB7 Retrotransposon protein2.3e-3580.37Show/hide
Query:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL
        MFNDGV L DSH EDIPTMYSQGV M  DEMFGT AGQ SERRNCSS SKRK+GSQHYE VEVIRSAM+FGNDQLKAIAD     RA +VELRA VVKQL
Subjt:  MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIAD-----RATEVELRAKVVKQL

Query:  QDIPELQ
        QDIP+LQ
Subjt:  QDIPELQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAATGACGGTGTTTCCCTCGATGATTCACATCGTGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGCCACCAGATGAGATGTTTGGAACACCTGCAGG
TCAAACAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGGAAATGATC
AATTAAAGGCAATTGCAGATCGTGCAACGGAGGTCGAATTGCGTGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAGCCGAGATAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAATGACGGTGTTTCCCTCGATGATTCACATCGTGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGCCACCAGATGAGATGTTTGGAACACCTGCAGG
TCAAACAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGGAAATGATC
AATTAAAGGCAATTGCAGATCGTGCAACGGAGGTCGAATTGCGTGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAGCCGAGATAGGATAA
Protein sequenceShow/hide protein sequence
MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPELQAEIG