; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0000737 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000737
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr08:25548335..25548640
RNA-Seq ExpressionIVF0000737
SyntenyIVF0000737
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045600.1 hypothetical protein E6C27_scaffold243G001060 [Cucumis melo var. makuwa]2.10e-1349.44Show/hide
Query:  MVSGVPTRRETLVNGEEDVRGLVVGFEVDRRLRFCVVYGNFGVRFNSFATCLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD
        MVS VPTRRE LVNGEED+R                                 A LTMVLE  +VGL+I+ RRWSFDV GN+LFLAAFD
Subjt:  MVSGVPTRRETLVNGEEDVRGLVVGFEVDRRLRFCVVYGNFGVRFNSFATCLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD

KAA0047526.1 small ribosomal subunit protein S13 [Cucumis melo var. makuwa]2.82e-0975Show/hide
Query:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFDGVRR
        AGLT+VLE  +VGLAIR RRWSFDV  N+LFLAAF+ VRR
Subjt:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFDGVRR

KAA0052379.1 hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa]2.10e-1082.05Show/hide
Query:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD
        CLTAGLTMVLE  +VGLAIR RRWSFDV  N LFLAAFD
Subjt:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD

TYK00149.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.58e-0780Show/hide
Query:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAF
        AGLTMVLE S+VGL I  RRWSFDV GN LFLAAF
Subjt:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAF

TYK30860.1 reactive Intermediate Deaminase A [Cucumis melo var. makuwa]3.35e-1082.05Show/hide
Query:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD
        CLTAGLTMVLE  +VGLAIR RRWSFDV  N LFLAAFD
Subjt:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD

TrEMBL top hitse value%identityAlignment
A0A5A7TR50 Uncharacterized protein1.9e-1049.44Show/hide
Query:  MVSGVPTRRETLVNGEEDVRGLVVGFEVDRRLRFCVVYGNFGVRFNSFATCLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD
        MVS VPTRRE LVNGEED+R                                 A LTMVLE  +VGL+I+ RRWSFDV GN+LFLAAFD
Subjt:  MVSGVPTRRETLVNGEEDVRGLVVGFEVDRRLRFCVVYGNFGVRFNSFATCLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD

A0A5A7UFX3 Uncharacterized protein5.7e-0782.05Show/hide
Query:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD
        CLTAGLTMVLE  +VGLAIR RRWSFDV  N LFLAAFD
Subjt:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD

A0A5D3BPV7 Ty3-gypsy retrotransposon protein6.9e-0580Show/hide
Query:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAF
        AGLTMVLE S+VGL I  RRWSFDV GN LFLAAF
Subjt:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAF

A0A5D3DT03 Small ribosomal subunit protein S131.6e-0675Show/hide
Query:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFDGVRR
        AGLT+VLE  +VGLAIR RRWSFDV  N+LFLAAF+ VRR
Subjt:  AGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFDGVRR

A0A5D3E5H8 Reactive Intermediate Deaminase A5.7e-0782.05Show/hide
Query:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD
        CLTAGLTMVLE  +VGLAIR RRWSFDV  N LFLAAFD
Subjt:  CLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCCGGCGTTCCAACAAGAAGAGAGACATTGGTCAATGGAGAGGAAGACGTTAGAGGTTTAGTCGTAGGTTTCGAGGTAGACAGAAGGTTACGGTTTTGCGTTGT
TTATGGCAACTTTGGCGTTCGTTTCAACAGCTTTGCAACGTGTTTAACGGCTGGTTTAACTATGGTTTTGGAGTCATCAAAGGTTGGTTTAGCCATCAGAGAAAGACGTT
GGAGTTTCGACGTCATCGGCAACAGGCTTTTTTTAGCAGCGTTTGACGGCGTCCGACGTTGGTCATGGGTTTGCGGCAAGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCCGGCGTTCCAACAAGAAGAGAGACATTGGTCAATGGAGAGGAAGACGTTAGAGGTTTAGTCGTAGGTTTCGAGGTAGACAGAAGGTTACGGTTTTGCGTTGT
TTATGGCAACTTTGGCGTTCGTTTCAACAGCTTTGCAACGTGTTTAACGGCTGGTTTAACTATGGTTTTGGAGTCATCAAAGGTTGGTTTAGCCATCAGAGAAAGACGTT
GGAGTTTCGACGTCATCGGCAACAGGCTTTTTTTAGCAGCGTTTGACGGCGTCCGACGTTGGTCATGGGTTTGCGGCAAGTTCTAA
Protein sequenceShow/hide protein sequence
MVSGVPTRRETLVNGEEDVRGLVVGFEVDRRLRFCVVYGNFGVRFNSFATCLTAGLTMVLESSKVGLAIRERRWSFDVIGNRLFLAAFDGVRRWSWVCGKF