CuGenDBv2

Gene ID	IVF0000751
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr11:17800150..17800733
RNA-Seq Expression	IVF0000751
Synteny	IVF0000751
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

1.26e-102

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]

2.53e-102

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

KAA0048362.1 retrotransposon protein [Cucumis melo var. makuwa]

1.10e-102

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

KAA0057083.1 retrotransposon protein [Cucumis melo var. makuwa]

2.53e-102

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]

3.19e-104

89.53

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPG NIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIV EKE+FDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TXU5 Retrotransposon protein

2.0e-81

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

A0A5A7UME4 Retrotransposon protein

3.4e-81

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

A0A5D3C1M0 Retrotransposon protein

2.3e-82

89.53

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPG NIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIV EKE+FDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

A0A5D3CBF7 Retrotransposon protein

3.4e-81

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

A0A5D3DPR5 Retrotransposon protein

2.0e-81

90.12

Show/hide

Query:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
Subjt:  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Query:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT
        IGSNDPPGYDA AADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS+G      G+  D   IV T
Subjt:  IGSNDPPGYDAFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLS----GNVQDMPQIVGT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G30140.1 unknown protein

1.4e-10

33.33

Show/hide

Query:  GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        G N +     SR+K +K ++ +  +++  + SGFGW+ E K   A  EV+ D++K+HP  K +  +S  H+++L  +FG   ATG  A   +D
Subjt:  GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

AT4G02210.1 unknown protein

1.1e-04

24.71

Show/hide

Query:  IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        + +R K ++ +F ++  +   +  GF W+D ++ +VA+  V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Subjt:  IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

AT4G02210.2 unknown protein

1.1e-04

24.71

Show/hide

Query:  IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        + +R K ++ +F ++  +   +  GF W+D ++ +VA+  V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Subjt:  IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATGGCGTTCAAGATCCCAGGTTCTAATATCCATGCTTCAACCATCGATAGTCGAATCAAATTGATGAAGAGAATGTTTCACGCACTTGCGGAGATGCGTGGCCCAAA
CTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCTGAGAAAGAAGTCTTTGACGATTGGGTAAAGAGTCATCCGGCGGCGAAAGGCCTCCTTAATAAGT
CGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGTCGGGCTGAGAGTTTTGCGGACATTGGGTCAAACGATCCTCCTGGGTATGAC
GCATTTGCTGCTGATGCTATGCCAGATACGGACTTTCCGCCAATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGA
ACGTAGAAATGTTTCAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD
AFAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSAGLSGNVQDMPQIVGT

IVF0000751 (gene) of Melon (IVF77) v1 genome