; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0000776 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000776
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptiontRNA ligase 1
Genome locationchr12:4521528..4522873
RNA-Seq ExpressionIVF0000776
SyntenyIVF0000776
Gene Ontology termsGO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003972 - RNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR038837 - tRNA ligase 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059482.1 uncharacterized protein E6C27_scaffold242G002130 [Cucumis melo var. makuwa]6.53e-7957.25Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP--------------------------------------------------------------
        MSALQRIFY KILP PPFSSSY VFPFICHPLSHFILP                                                              
Subjt:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP--------------------------------------------------------------

Query:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS
                                +QKWKEKA+VD+SPTESEAA EVVT+ALGKLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTS
Subjt:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS

Query:  GAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM
        GAAVIEGEK  TNGT+TENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS YT  +IRATFYPKFENEKSDQE+
Subjt:  GAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM

TYJ97079.1 hypothetical protein E5676_scaffold75204G00010 [Cucumis melo var. makuwa]6.18e-7375.74Show/hide
Query:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLS
        +QKWKEKAEVDRSPTESEAAAE                  LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLS
Subjt:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLS

Query:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEMFFPFTMSLACFDMCFSVHACS-CVLVCES
        QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQE+       +     CFS   C   VL+C S
Subjt:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEMFFPFTMSLACFDMCFSVHACS-CVLVCES

XP_004147268.2 tRNA ligase 1 isoform X1 [Cucumis sativus]6.10e-7866.82Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIF  K LP PPFSSSY VFPFI HPLSH+ILP                                 +QKWKEKA+ DR+ TESEAAAEVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQ              LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEK PTN T+TENKGSNAG+A Q GVV LSQL KSNQIEKF VDNS 
Subjt:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEM
        YT  +IRATFYPKFENEKSDQE+
Subjt:  YTHEEIRATFYPKFENEKSDQEM

XP_008463605.1 PREDICTED: uncharacterized protein LOC103501711 isoform X1 [Cucumis melo]1.26e-8570.85Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIFY KILP PPFSSSY VFPFICHPLSHFILP                                 +QKWKEKA+VD+SPTESEAA EVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTSGAAVIEGEK  TNGT+TENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS 
Subjt:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEM
        YT  +IRATFYPKFENEKSDQE+
Subjt:  YTHEEIRATFYPKFENEKSDQEM

XP_038894223.1 tRNA ligase 1 isoform X1 [Benincasa hispida]3.64e-7161.67Show/hide
Query:  MSALQRIFYTKILPRP----PFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVT
        MSA QRIF    LP P    P + +Y  FPFICHPLSHFILP                                 +QKWKEKA+VDR+ TESEAAAEVVT
Subjt:  MSALQRIFYTKILPRP----PFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVT

Query:  SALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIV
        +ALGKLRVTE+DQ              LTNQ TPGLAHRA+WKPKAYGTTSGAA +EGEK PTNGT+TENKGSNA LA Q G VGLSQL K NQIEKF V
Subjt:  SALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIV

Query:  DNSAYTHEEIRATFYPKFENEKSDQEM
        DNS YT  +IRATFYPKFENEKSDQE+
Subjt:  DNSAYTHEEIRATFYPKFENEKSDQEM

TrEMBL top hitse value%identityAlignment
A0A0A0LVA8 Uncharacterized protein6.9e-8064.71Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIF  K LP PPFSSSY VFPFI HPLSH+ILP                                 +QKWKEKA+ DR+ TESEAAAEVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQ------------SFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQ            + LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEK PTN T+TENKGSNAG+A Q GVV LSQL KSNQIEKF VDNS 
Subjt:  KLRVTESDQ------------SFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEMFFPFTMSLACFDMCFSVHACSCVLVCESLDYHLWVIGQILLQLLGQWCF
        YT  +IRATFYPKFENEKSDQE                 VHACSCVLV ESL+YHLWVIGQILLQL G   F
Subjt:  YTHEEIRATFYPKFENEKSDQEMFFPFTMSLACFDMCFSVHACSCVLVCESLDYHLWVIGQILLQLLGQWCF

A0A1S3CK49 uncharacterized protein LOC103501711 isoform X13.3e-7470.85Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIFY KILP PPFSSSY VFPFICHPLSHFILP                                 +QKWKEKA+VD+SPTESEAA EVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTSGAAVIEGEK  TNGT+TENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS 
Subjt:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEM
        YT  +IRATFYPKFENEKSDQE+
Subjt:  YTHEEIRATFYPKFENEKSDQEM

A0A1S3CL84 uncharacterized protein LOC103501711 isoform X21.3e-5780.92Show/hide
Query:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNA
        +QKWKEKA+VD+SPTESEAA EVVT+ALGKLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTSGAAVIEGEK  TNGT+TENKGSNA
Subjt:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNA

Query:  GLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM
        GLAVQGG VGLSQL KSNQIEKFIVDNS YT  +IRATFYPKFENEKSDQE+
Subjt:  GLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM

A0A5A7UUA9 Uncharacterized protein4.6e-6857.25Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP--------------------------------------------------------------
        MSALQRIFY KILP PPFSSSY VFPFICHPLSHFILP                                                              
Subjt:  MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILP--------------------------------------------------------------

Query:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS
                                +QKWKEKA+VD+SPTESEAA EVVT+ALGKLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTS
Subjt:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS

Query:  GAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM
        GAAVIEGEK  TNGT+TENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS YT  +IRATFYPKFENEKSDQE+
Subjt:  GAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM

A0A5D3BDK5 Uncharacterized protein1.1e-5675.74Show/hide
Query:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLS
        +QKWKEKAEVDRSPTESEAAAE                  LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLS
Subjt:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLS

Query:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEMFFPFTMSLACFDMCFSVHACS-CVLVCES
        QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQE      + +     CFS   C   VL+C S
Subjt:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEMFFPFTMSLACFDMCFSVHACS-CVLVCES

SwissProt top hitse value%identityAlignment
Q0WL81 tRNA ligase 11.1e-1338.41Show/hide
Query:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQL
        A  +   + +   AE V +  G L + ES+ +   L +Q T    HR    +WKPK+YGT SG++      T    T+  ++  ++G    G  + LS++
Subjt:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQL

Query:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM
           N +EKF VD S Y H +IRATFYPKFENEK+DQE+
Subjt:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM

Arabidopsis top hitse value%identityAlignment
AT1G07910.1 RNAligase7.6e-1538.41Show/hide
Query:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQL
        A  +   + +   AE V +  G L + ES+ +   L +Q T    HR    +WKPK+YGT SG++      T    T+  ++  ++G    G  + LS++
Subjt:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQL

Query:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM
           N +EKF VD S Y H +IRATFYPKFENEK+DQE+
Subjt:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM

AT1G07910.2 RNAligase7.6e-1538.41Show/hide
Query:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQL
        A  +   + +   AE V +  G L + ES+ +   L +Q T    HR    +WKPK+YGT SG++      T    T+  ++  ++G    G  + LS++
Subjt:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKTPTNGTATENKGSNAGLAVQGGVVGLSQL

Query:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM
           N +EKF VD S Y H +IRATFYPKFENEK+DQE+
Subjt:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGTTGCAGAGAATTTTCTATACTAAAATTCTTCCTCGCCCTCCTTTTTCTTCGTCTTACTGGGTCTTCCCCTTCATTTGCCACCCTCTTTCCCACTTTATCTT
ACCACAACAGAAGTGGAAAGAGAAGGCAGAGGTTGACAGAAGTCCTACAGAGTCAGAGGCTGCAGCGGAAGTTGTTACTAGTGCACTCGGTAAATTGAGGGTCACTGAAA
GTGATCAATCTTTTCTGACAAATCAAGCCACCCCTGGACTTGCTCATAGAGCAATTTGGAAACCAAAAGCGTATGGAACAACCAGTGGGGCTGCAGTGATTGAAGGTGAA
AAAACACCTACCAATGGAACGGCAACTGAAAACAAAGGGAGTAATGCTGGACTGGCAGTACAGGGCGGTGTCGTTGGCTTGAGTCAATTATGCAAGAGCAATCAGATTGA
AAAATTTATTGTGGATAACTCCGCTTACACACATGAGGAAATAAGAGCAACGTTCTACCCAAAATTTGAGAATGAGAAGTCGGATCAGGAGATGTTTTTCCCATTCACCA
TGTCACTGGCTTGTTTTGATATGTGTTTCTCGGTGCATGCTTGTAGTTGTGTACTTGTTTGTGAATCTCTTGACTATCACCTTTGGGTCATTGGGCAAATTTTGCTGCAG
CTTTTGGGTCAATGGTGTTTCTTTAAAATACAGGTTCCCAAGGTTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGTTGCAGAGAATTTTCTATACTAAAATTCTTCCTCGCCCTCCTTTTTCTTCGTCTTACTGGGTCTTCCCCTTCATTTGCCACCCTCTTTCCCACTTTATCTT
ACCACAACAGAAGTGGAAAGAGAAGGCAGAGGTTGACAGAAGTCCTACAGAGTCAGAGGCTGCAGCGGAAGTTGTTACTAGTGCACTCGGTAAATTGAGGGTCACTGAAA
GTGATCAATCTTTTCTGACAAATCAAGCCACCCCTGGACTTGCTCATAGAGCAATTTGGAAACCAAAAGCGTATGGAACAACCAGTGGGGCTGCAGTGATTGAAGGTGAA
AAAACACCTACCAATGGAACGGCAACTGAAAACAAAGGGAGTAATGCTGGACTGGCAGTACAGGGCGGTGTCGTTGGCTTGAGTCAATTATGCAAGAGCAATCAGATTGA
AAAATTTATTGTGGATAACTCCGCTTACACACATGAGGAAATAAGAGCAACGTTCTACCCAAAATTTGAGAATGAGAAGTCGGATCAGGAGATGTTTTTCCCATTCACCA
TGTCACTGGCTTGTTTTGATATGTGTTTCTCGGTGCATGCTTGTAGTTGTGTACTTGTTTGTGAATCTCTTGACTATCACCTTTGGGTCATTGGGCAAATTTTGCTGCAG
CTTTTGGGTCAATGGTGTTTCTTTAAAATACAGGTTCCCAAGGTTTTTTAA
Protein sequenceShow/hide protein sequence
MSALQRIFYTKILPRPPFSSSYWVFPFICHPLSHFILPQQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGE
KTPTNGTATENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEMFFPFTMSLACFDMCFSVHACSCVLVCESLDYHLWVIGQILLQ
LLGQWCFFKIQVPKVF