CuGenDBv2

Gene ID	IVF0000790
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosome maturation factor
Genome location	chr04:932348..933662
RNA-Seq Expression	IVF0000790
Synteny	IVF0000790
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136199.1 uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]

4.96e-100

96.88

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFK PSQQL EIKAD G ELILPKKGNILAIQSFRNLKEIEKS+SLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

XP_008466004.1 PREDICTED: uncharacterized protein LOC103503567 isoform X1 [Cucumis melo]

3.10e-108

100

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

XP_008466005.1 PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo]

8.24e-106

99.38

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFKRPSQQL EIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

XP_011652641.1 uncharacterized protein LOC101212292 isoform X1 [Cucumis sativus]

1.87e-102

97.5

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFK PSQQLAEIKAD G ELILPKKGNILAIQSFRNLKEIEKS+SLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

XP_038888243.1 uncharacterized protein LOC120078100 [Benincasa hispida]

6.12e-90

88.89

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQKRKKHSPSSSSI NY GQDDD++SKSFRFSFPSP PPRQEK VHAIPILTIICFLILY  SH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSL--KSRPPRKLADF
        QFHGFKRP++QL EIKAD G ELILPKKGNILAIQSFRNLKEIEKS+SL  KSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSL--KSRPPRKLADF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LE94 Uncharacterized protein

1.4e-76

96.88

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFK PSQQL EIKA DG ELILPKKGNILAIQSFRNLKEIEKS+SLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

A0A1S3CQ78 uncharacterized protein LOC103503567 isoform X1

7.7e-83

100

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

A0A1S3CQJ2 uncharacterized protein LOC103503567 isoform X2

5.5e-81

99.38

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFKRPSQQL EIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

A0A5A7T6T2 Uncharacterized protein

5.5e-81

99.38

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFKRPSQQL EIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

A0A6J1JZ13 uncharacterized protein LOC111491006

3.1e-68

88.12

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSSS ILNY GQDDDK+SKSFRFSFP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF
        QFHGFKRPS+ L EIKA +G ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKLADF
Subjt:  QFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G35470.1 unknown protein

3.0e-23

48.28

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSP-SSSSILNYGGQDDDKSSKSFR----FSFPSP---SPPRQEKLVHAIPILTIICFLILYIFSH
        MQR SL S  SKLH +G G K D    DD K    SP SSSS ++Y    DD   K F+     S  SP   +  +QEKLVH IPILT+ICF+ILY+ S+
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSP-SSSSILNYGGQDDDKSSKSFR----FSFPSP---SPPRQEKLVHAIPILTIICFLILYIFSH

Query:  SPSQSDLAQFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQ-SFRNLKEIEKSHSLKSRP-----PRKLADF
        +PSQSDLAQF+GF RPS+ L E   ++G E+    + + L+I+ S RNL+E E S + KS P      RK ADF
Subjt:  SPSQSDLAQFHGFKRPSQQLAEIKADDGHELILPKKGNILAIQ-SFRNLKEIEKSHSLKSRP-----PRKLADF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAAAGGCAATCTCTAGGCTCACCGGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCAAAGTCCGATGAGGATCCGGCCGACGATCAAAAGCGCAAGAAGCACTCTCC
ATCTTCTTCCTCAATTCTCAACTACGGCGGACAAGACGACGATAAATCCTCTAAATCTTTCCGATTCTCATTTCCATCGCCTTCTCCTCCGCGCCAAGAGAAGTTAGTTC
ACGCCATACCTATTCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCGCAGTTTCACGGATTCAAGCGTCCTTCACAA
CAATTAGCAGAAATCAAAGCCGATGATGGACACGAACTTATTCTACCCAAGAAAGGCAACATTTTAGCGATTCAAAGTTTCCGTAACCTAAAAGAGATTGAAAAATCACA
CTCTCTTAAATCTCGCCCTCCGCGGAAACTTGCCGATTTCTAA

mRNA sequence

Show/hide mRNA sequence

GGCAAATGGAAAAGTCACACTAAAAGGTAATGAGAGGGTACACTAAAAGCCTTTCAGTGAGCAAAATTGCTTCTCTCTGCTTCTCTCTGCTTCTCTCTCTACCATGCAAA
GGCAATCTCTAGGCTCACCGGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCAAAGTCCGATGAGGATCCGGCCGACGATCAAAAGCGCAAGAAGCACTCTCCATCTTCT
TCCTCAATTCTCAACTACGGCGGACAAGACGACGATAAATCCTCTAAATCTTTCCGATTCTCATTTCCATCGCCTTCTCCTCCGCGCCAAGAGAAGTTAGTTCACGCCAT
ACCTATTCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCGCAGTTTCACGGATTCAAGCGTCCTTCACAACAATTAG
CAGAAATCAAAGCCGATGATGGACACGAACTTATTCTACCCAAGAAAGGCAACATTTTAGCGATTCAAAGTTTCCGTAACCTAAAAGAGATTGAAAAATCACACTCTCTT
AAATCTCGCCCTCCGCGGAAACTTGCCGATTTCTAAACTCTGCATTTCCCTCTATCTGACCTTCCGGTAAACTCTCACGGACTTCATTTCCACCGTGCGGATTCAGCTGG
CGCGTGTGCATCCATAACTTTTTTTTTTTTTTCCTAAATCTTCTGTACATCAAATAATCCGTCAGATTAAATTGTTCTTTTGTTCCTTTCTTCTTTTGCTTTTACTATAT
TTTTTGTTCGCCTCTGCATACGCCGGCGGCGCTTATGTAACTTCCGACGAGATACTCTCAATTTAATCTAAACAAAGAATGAGCAAAATTATTATCATTAGATCAGTAAG
CAGAATCACCAACCGACGCGCCGTATTCTCGCCGGCTATGGAGCGCGTGAAGGCCGGCGCCAGCGCGGCGGAGATGGAAATGGAATCCAGCTGGTATATATTAAATATTA
ATCGTTTTATTTTTCGATTTTCCGAATCGGACCGTTAGGGCATTGGGAGAAGGACCAAAGATGCCAGCTGGAAAAACGAAATAGTCGCTGAGGGTATCAGGTTCTTTCTT
TCTATTATATTTATTCTTAGCCCCTCCATCTATTG

Protein sequence

Show/hide protein sequence

MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQ
QLAEIKADDGHELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF

IVF0000790 (gene) of Melon (IVF77) v1 genome