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IVF0000825 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000825
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr11:18858807..18859763
RNA-Seq ExpressionIVF0000825
SyntenyIVF0000825
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026022.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.33e-3474.71Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIG
        ML D FS GI RE +SLE EL C+PKRSKRWPMLPTS ERS+   NHWKCTCSEGNGLSSRTSG R KKTRA +P TQFS P VK G
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIG

KAA0035524.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]5.33e-3350Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH
        ML DTFS+GI ++ SSLE E RC+PK+SK WPMLPT  +RS+ V+NHWKCTC E N LSSRTS VR KKTRAR+P TQFS P V+        P  C   
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH

Query:  KSFDPRGLYSKDFNPHSWQALRHVFQRYSR-EASYLEEELRKRVELKDLKCSSQENASEKAPNS
        K     G       P   Q  + V       EA+      RK +EL+D +CSSQENAS  A +S
Subjt:  KSFDPRGLYSKDFNPHSWQALRHVFQRYSR-EASYLEEELRKRVELKDLKCSSQENASEKAPNS

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]9.11e-3639.03Show/hide
Query:  DTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPP--DGFFPFLCIGHK
        D F   + RE SSLEEEL C+ KRSKRWPM PT+ ERS+ V NHWKCTCSEGNGL+SRTSG   KKTRAR+P +QFS    K   P        L I   
Subjt:  DTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPP--DGFFPFLCIGHK

Query:  SFDPRGLYSKDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLLTSTNTFDMLADTFSQGIGQKA
         F+ R                                                      P                   TST+T  ML D FS+GIGQ+A
Subjt:  SFDPRGLYSKDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLLTSTNTFDMLADTFSQGIGQKA

Query:  RSFEGE-------------------------------RSEGNGLSSRTSSVHPMKTRARMLRTQFSRLG
         S EGE                               R EGNGLSSRT S HP KTRARM RTQFSR G
Subjt:  RSFEGE-------------------------------RSEGNGLSSRTSSVHPMKTRARMLRTQFSRLG

KAA0066117.1 mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa]1.99e-3276.19Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRV
        ML DTFS GI RE SSLE EL C+PKRSKRWP LPTS ERS+ V NHWKCTCSEGNGLSSRTSG R KKT A +P TQFS P V
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRV

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]1.15e-3741.2Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH
        MLLD F +GI R+ SSL+ ELRC+PKRSKRWPML    ERS  V NHWK TC+E N LSSRT  VRHK T+AR P T    P                  
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH

Query:  KSFDPRGLYSKDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDG---FFLL-------------TSTN
              G+    F+           Q   REAS LE EL KR  L     S       K  +SVFSSW K  S      +FLL             TST+
Subjt:  KSFDPRGLYSKDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDG---FFLL-------------TSTN

Query:  TFDMLADTFSQGIGQKARSFEGER-------------------------------SEGNGLSSRTSSVHPMKTRARMLRTQFSR
        T DML D FSQGIG++A S EGE                                SE N L SRTS+V P KT ARM +TQF R
Subjt:  TFDMLADTFSQGIGQKARSFEGER-------------------------------SEGNGLSSRTSSVHPMKTRARMLRTQFSR

TrEMBL top hitse value%identityAlignment
A0A5A7SLK2 Retrovirus-related Pol polyprotein from transposon 17.66.8e-2774.71Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIG
        ML D FS GI RE +SLE EL C+PKRSKRWPMLPTS ERS+   NHWKCTCSEGNGLSSRTSG R KKTRA +P TQFS P VK G
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIG

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.3e-3043.1Show/hide
Query:  DTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPP--DGFFPFLCIGHK
        D F   + RE SSLEEEL C+ KRSKRWPM PT+ ERS+ V NHWKCTCSEGNGL+SRTSG   KKTRAR+P +QFS    K   P        L I   
Subjt:  DTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPP--DGFFPFLCIGHK

Query:  SFDPRGLYSKDFNPHSWQALRHVFQR-YSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLLTSTNTFDMLADTFSQGIGQK
         F+ R   +   + H+   L  +F R   +EAS LE EL                            W   C+P        +  + ML  +  +  G +
Subjt:  SFDPRGLYSKDFNPHSWQALRHVFQR-YSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLLTSTNTFDMLADTFSQGIGQK

Query:  ARSFEGERSEGNGLSSRTSSVHPMKTRARMLRTQFSRLG
            +  R EGNGLSSRT S HP KTRARM RTQFSR G
Subjt:  ARSFEGERSEGNGLSSRTSSVHPMKTRARMLRTQFSRLG

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 407.5e-2676.19Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRV
        ML DTFS GI RE SSLE EL C+PKRSKRWP LPTS ERS+ V NHWKCTCSEGNGLSSRTSG R KKT A +P TQFS P V
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRV

A0A5D3DIF8 Gag/pol protein3.2e-3241.2Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH
        MLLD F +GI R+ SSL+ ELRC+PKRSKRWPML    ERS  V NHWK TC+E N LSSRT  VRHK T+AR P T    P                  
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH

Query:  KSFDPRGLYSKDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCS---PDGFFLL-------------TSTN
              G+    F+           Q   REAS LE EL KR  L     S       K  +SVFSSW K  S      +FLL             TST+
Subjt:  KSFDPRGLYSKDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCS---PDGFFLL-------------TSTN

Query:  TFDMLADTFSQGIGQKARSFEGER-------------------------------SEGNGLSSRTSSVHPMKTRARMLRTQFSR
        T DML D FSQGIG++A S EGE                                SE N L SRTS+V P KT ARM +TQF R
Subjt:  TFDMLADTFSQGIGQKARSFEGER-------------------------------SEGNGLSSRTSSVHPMKTRARMLRTQFSR

A0A5D3E5W4 NBS-LRR type resistance protein4.0e-2750Show/hide
Query:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH
        ML DTFS+GI ++ SSLE E RC+PK+SK WPMLPT  +RS+ V+NHWKCTC E N LSSRTS VR KKTRAR+P TQFS P V+        P  C   
Subjt:  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGH

Query:  KSFDPRGLYSKDFNPHSWQALRHVFQRY-SREASYLEEELRKRVELKDLKCSSQENASEKAPNS
        K     G       P   Q  + V       EA+      RK +EL+D +CSSQENAS  A +S
Subjt:  KSFDPRGLYSKDFNPHSWQALRHVFQRY-SREASYLEEELRKRVELKDLKCSSQENASEKAPNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCTTGACACATTTTCCAGAGGTATAGATCGGGAAGTGAGCTCATTGGAGGAAGAATTAAGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAG
TCACGAACGCTCGACCGATGTCGAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGAACTTCTGGTGTTCGTCACAAGAAAACGCGAGCGAGAA
TACCCTGGACTCAGTTTTCTTGTCCTCGTGTAAAAATTGGTCCCCCCGACGGTTTCTTCCCTTTTCTTTGTATTGGTCATAAGTCTTTCGATCCTCGGGGCTTGTACTCC
AAGGACTTCAACCCACACTCCTGGCAAGCTCTCAGACACGTTTTCCAAAGGTATAGTCGAGAAGCGAGCTATTTGGAGGAAGAACTGAGGAAACGGGTTGAGCTCAAGGA
CTTAAAGTGTTCGTCCCAAGAAAATGCAAGCGAGAAAGCCCCGAACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGTTCTCCCGACGGTTTCTTCCTTTTGACTTCAACCA
ACACTTTTGACATGCTCGCTGACACGTTTTCCCAAGGTATAGGTCAGAAGGCGAGATCGTTCGAGGGAGAACGGAGTGAAGGAAATGGGCTGAGCTCGAGGACATCCAGT
GTTCATCCCATGAAAACGCGAGCGAGAATGCTCCGGACTCAATTTTCTCGTCTTGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCTTGACACATTTTCCAGAGGTATAGATCGGGAAGTGAGCTCATTGGAGGAAGAATTAAGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAG
TCACGAACGCTCGACCGATGTCGAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGAACTTCTGGTGTTCGTCACAAGAAAACGCGAGCGAGAA
TACCCTGGACTCAGTTTTCTTGTCCTCGTGTAAAAATTGGTCCCCCCGACGGTTTCTTCCCTTTTCTTTGTATTGGTCATAAGTCTTTCGATCCTCGGGGCTTGTACTCC
AAGGACTTCAACCCACACTCCTGGCAAGCTCTCAGACACGTTTTCCAAAGGTATAGTCGAGAAGCGAGCTATTTGGAGGAAGAACTGAGGAAACGGGTTGAGCTCAAGGA
CTTAAAGTGTTCGTCCCAAGAAAATGCAAGCGAGAAAGCCCCGAACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGTTCTCCCGACGGTTTCTTCCTTTTGACTTCAACCA
ACACTTTTGACATGCTCGCTGACACGTTTTCCCAAGGTATAGGTCAGAAGGCGAGATCGTTCGAGGGAGAACGGAGTGAAGGAAATGGGCTGAGCTCGAGGACATCCAGT
GTTCATCCCATGAAAACGCGAGCGAGAATGCTCCGGACTCAATTTTCTCGTCTTGGGTAA
Protein sequenceShow/hide protein sequence
MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGHKSFDPRGLYS
KDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLLTSTNTFDMLADTFSQGIGQKARSFEGERSEGNGLSSRTSS
VHPMKTRARMLRTQFSRLG