| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025729.1 gag/pol protein [Cucumis melo var. makuwa] | 5.65e-223 | 77.99 | Show/hide |
Query: QFFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRP
F LP + F E+A + +NN + V++ PY LWK G Y KES+G LFYDPQE KVFVS N TFLEEDHIRN+QTRSKLVLEEISKN TDRP
Subjt: QFFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRP
Query: SSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPI
SSSTK+VDKTRNIGQTHPSQEL EPRRSRRVVRQ DHYLGLS+AQIIIP+DGIEDPLTYKQTMNDVDCDQWIK +DL+MESMYSNSVWTLVDQ + V+PI
Subjt: SSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPI
Query: ACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK---
C+W+YKRKRDQAGKVQTF+ARLVAKGYTQ EGIDYEETFSPV MIKSIRI+LSIATFYDYEIWHMDVKT FLNGNL+ESIYMVQ EGFIQKGQEQK
Subjt: ACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK---
Query: -------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI
+INS VAFLVLYVDDILLIGND+GHL DIK WLATQFQM DL NA Y+ GI IV+N KNKTLA+SQTSYIDKMLSRYKMQNSK GLLPYRYGI
Subjt: -------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI
Query: -----QCAKPPQEVEDMSNIPYASAIG
QC K PQEVEDMSNIPYASA+G
Subjt: -----QCAKPPQEVEDMSNIPYASAIG
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| KAA0040688.1 gag/pol protein [Cucumis melo var. makuwa] | 4.12e-200 | 75.82 | Show/hide |
Query: NNDTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELG
N + V++ PY LWK G Y KES+G LFYDPQENKVFVSTN TFLEEDHIRN+QTRSKLVLEEISKN TDRPSSSTKVVDKTRNIGQTHPSQ+LG
Subjt: NNDTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELG
Query: EPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARL
EPR S RVVRQ D YLGLSEA+IIIP+D IEDPLTYKQ MNDVDCDQWIK MD+EMESMYSN VWTLVDQP+ V+PI+CKW+YKRKRDQ GKVQTF+A+L
Subjt: EPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARL
Query: VAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQE----QKVINSTVAFLVLYVDDILLIGND
VAK YTQKEG DYEETFSPVAMIKSIRI L IATFYDYEIW MDVKT F K ++ GF Q E +++INSTVAFL++YVDDILL ND
Subjt: VAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQE----QKVINSTVAFLVLYVDDILLIGND
Query: IGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----QCAKPPQEVEDMSNIPYASAI
+ HL DIK WLATQFQMKDL NAQY+LGI IV+N KNKTLAMSQTSYIDKMLSRYKMQNSK G+L YRYGI QC K PQEVEDMSNIPYASA+
Subjt: IGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----QCAKPPQEVEDMSNIPYASAI
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| KAA0051500.1 gag/pol protein [Cucumis melo var. makuwa] | 2.78e-220 | 99.67 | Show/hide |
Query: TRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRK
+RNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRK
Subjt: TRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRK
Query: RDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVINSTVAFLVLY
RDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVINSTVAFLVLY
Subjt: RDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVINSTVAFLVLY
Query: VDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGIQCAKPPQEVEDMSNIPYAS
VDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGIQCAKPPQEVEDMSNIPYAS
Subjt: VDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGIQCAKPPQEVEDMSNIPYAS
Query: AIGEPDV
AIGEPDV
Subjt: AIGEPDV
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| TYK03644.1 gag/pol protein [Cucumis melo var. makuwa] | 1.15e-215 | 77.67 | Show/hide |
Query: KIVLGKGYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYL
K+ L GYPKESKG LFYDPQENKVFVSTN TFLEEDHIRN+QTRSKLVLEEISKNTTDRPSS TKVVDKTRNIGQTH QELG+PRRS RVVRQ D YL
Subjt: KIVLGKGYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYL
Query: GLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEET
GLSEAQIIIP+DGIEDPLTYK MNDVD DQWIK MDLEMESMYSNSVWTLVDQPN+VKPI CKW+YKRKRDQAGKVQTF+ARLVAKGYTQKEGIDYEE
Subjt: GLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEET
Query: FSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKV-----------------------------------------
FS AMIKSIRI+LSIATFYDYEIW MDVKTTFLN NL+ESIYMVQPE FIQKGQEQK+
Subjt: FSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKV-----------------------------------------
Query: --INSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----Q
+NSTVAFLVLYVDDILLIGND+GHLADIK WLA QFQMKDLGNAQY+LG+ IV+N KNKTLAMSQTSYIDKMLSRYKM NSK GLLPYRYGI Q
Subjt: --INSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----Q
Query: CAKPPQEVEDMSNIPYASAIG
C K PQEVEDMSNIPYASA+G
Subjt: CAKPPQEVEDMSNIPYASAIG
|
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| TYK06159.1 gag/pol protein [Cucumis melo var. makuwa] | 5.08e-224 | 78.22 | Show/hide |
Query: QFFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRP
F LP + F E+A + +NN + V++ PY LWK G Y KES+G LFYDPQE KVFVS N TFLEEDHIRN+QTRSKLVLEEISKN TDRP
Subjt: QFFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRP
Query: SSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPI
SSSTK+VDKTRNIGQTHPSQEL EPRRSRRVVRQ DHYLGLS+AQIIIP+DGIEDPLTYKQTMNDVDCDQWIK +DL+MESMYSNSVWTLVDQ + V+PI
Subjt: SSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPI
Query: ACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK---
C+W+YKRKRDQAGKVQTF+ARLVAKGYTQKEGIDYEETFSPV MIKSIRI+LSIATFYDYEIWHMDVKT FLNGNL+ESIYMVQ EGFIQKGQEQK
Subjt: ACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK---
Query: -------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI
+INS VAFLVLYVDDILLIGND+GHL DIK WLATQFQM DL NA Y+ GI IV+N KNKTLA+SQTSYIDKMLSRYKMQNSK GLLPYRYGI
Subjt: -------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI
Query: -----QCAKPPQEVEDMSNIPYASAIG
QC K PQEVEDMSNIPYASA+G
Subjt: -----QCAKPPQEVEDMSNIPYASAIG
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|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SKC9 Gag/pol protein | 7.8e-182 | 78.17 | Show/hide |
Query: FFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPS
F LP + F E+A + +NN + V++ PY LWK G Y KES+G LFYDPQE KVFVS N TFLEEDHIRN+QTRSKLVLEEISKN TDRPS
Subjt: FFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPS
Query: SSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIA
SSTK+VDKTRNIGQTHPSQEL EPRRSRRVVRQ DHYLGLS+AQIIIP+DGIEDPLTYKQTMNDVDCDQWIK +DL+MESMYSNSVWTLVDQ + V+PI
Subjt: SSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIA
Query: CKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK----
C+W+YKRKRDQAGKVQTF+ARLVAKGYTQ EGIDYEETFSPV MIKSIRI+LSIATFYDYEIWHMDVKT FLNGNL+ESIYMVQ EGFIQKGQEQK
Subjt: CKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK----
Query: ------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-
+INS VAFLVLYVDDILLIGND+GHL DIK WLATQFQM DL NA Y+ GI IV+N KNKTLA+SQTSYIDKMLSRYKMQNSK GLLPYRYGI
Subjt: ------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-
Query: ----QCAKPPQEVEDMSNIPYASAIG
QC K PQEVEDMSNIPYASA+G
Subjt: ----QCAKPPQEVEDMSNIPYASAIG
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| A0A5A7TCP5 Gag/pol protein | 5.3e-162 | 75.82 | Show/hide |
Query: NNDTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELG
N + V++ PY LWK G Y KES+G LFYDPQENKVFVSTN TFLEEDHIRN+QTRSKLVLEEISKN TDRPSSSTKVVDKTRNIGQTHPSQ+LG
Subjt: NNDTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELG
Query: EPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARL
EPR S RVVRQ D YLGLSEA+IIIP+D IEDPLTYKQ MNDVDCDQWIK MD+EMESMYSN VWTLVDQP+ V+PI+CKW+YKRKRDQ GKVQTF+A+L
Subjt: EPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARL
Query: VAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQE----QKVINSTVAFLVLYVDDILLIGND
VAK YTQKEG DYEETFSPVAMIKSIRI L IATFYDYEIW MDVKT F K ++ GF Q E +++INSTVAFL++YVDDILL ND
Subjt: VAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQE----QKVINSTVAFLVLYVDDILLIGND
Query: IGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----QCAKPPQEVEDMSNIPYASAI
+ HL DIK WLATQFQMKDL NAQY+LGI IV+N KNKTLAMSQTSYIDKMLSRYKMQNSK G+L YRYGI QC K PQEVEDMSNIPYASA+
Subjt: IGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----QCAKPPQEVEDMSNIPYASAI
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| A0A5A7U8L5 Gag/pol protein | 9.2e-175 | 99.67 | Show/hide |
Query: TRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRK
+RNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRK
Subjt: TRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRK
Query: RDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVINSTVAFLVLY
RDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVINSTVAFLVLY
Subjt: RDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVINSTVAFLVLY
Query: VDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGIQCAKPPQEVEDMSNIPYAS
VDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGIQCAKPPQEVEDMSNIPYAS
Subjt: VDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGIQCAKPPQEVEDMSNIPYAS
Query: AIGEPDV
AIGEPDV
Subjt: AIGEPDV
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| A0A5D3BX45 Gag/pol protein | 2.9e-176 | 77.67 | Show/hide |
Query: KIVLGKGYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYL
K+ L GYPKESKG LFYDPQENKVFVSTN TFLEEDHIRN+QTRSKLVLEEISKNTTDRPSS TKVVDKTRNIGQTH QELG+PRRS RVVRQ D YL
Subjt: KIVLGKGYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYL
Query: GLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEET
GLSEAQIIIP+DGIEDPLTYK MNDVD DQWIK MDLEMESMYSNSVWTLVDQPN+VKPI CKW+YKRKRDQAGKVQTF+ARLVAKGYTQKEGIDYEE
Subjt: GLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEET
Query: FSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK------------------------------------------
FS AMIKSIRI+LSIATFYDYEIW MDVKTTFLN NL+ESIYMVQPE FIQKGQEQK
Subjt: FSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK------------------------------------------
Query: -VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----Q
++NSTVAFLVLYVDDILLIGND+GHLADIK WLA QFQMKDLGNAQY+LG+ IV+N KNKTLAMSQTSYIDKMLSRYKM NSK GLLPYRYGI Q
Subjt: -VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-----Q
Query: CAKPPQEVEDMSNIPYASAIG
C K PQEVEDMSNIPYASA+G
Subjt: CAKPPQEVEDMSNIPYASAIG
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| A0A5D3C701 Gag/pol protein | 2.1e-182 | 78.4 | Show/hide |
Query: FFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPS
F LP + F E+A + +NN + V++ PY LWK G Y KES+G LFYDPQE KVFVS N TFLEEDHIRN+QTRSKLVLEEISKN TDRPS
Subjt: FFDLPKNVFMEFARKN----INN-DTGDVADNPYHLWKIVLGK-GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKNTTDRPS
Query: SSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIA
SSTK+VDKTRNIGQTHPSQEL EPRRSRRVVRQ DHYLGLS+AQIIIP+DGIEDPLTYKQTMNDVDCDQWIK +DL+MESMYSNSVWTLVDQ + V+PI
Subjt: SSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIA
Query: CKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK----
C+W+YKRKRDQAGKVQTF+ARLVAKGYTQKEGIDYEETFSPV MIKSIRI+LSIATFYDYEIWHMDVKT FLNGNL+ESIYMVQ EGFIQKGQEQK
Subjt: CKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQK----
Query: ------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-
+INS VAFLVLYVDDILLIGND+GHL DIK WLATQFQM DL NA Y+ GI IV+N KNKTLA+SQTSYIDKMLSRYKMQNSK GLLPYRYGI
Subjt: ------VINSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSKNGLLPYRYGI-
Query: ----QCAKPPQEVEDMSNIPYASAIG
QC K PQEVEDMSNIPYASA+G
Subjt: ----QCAKPPQEVEDMSNIPYASAIG
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.5e-36 | 27.27 | Show/hide |
Query: EFARKNINNDTGDVADNPYHLWKIVLGKGYPKESKGC-----LFYDPQENKVFVSTNTTFLEEDHIRN-------YQTRSKLVLEEISKNTTDRPSSS--
E KN ND+ + ++ +P ESK C L + NK F++ + +DH+ ++R E + + D P+ +
Subjt: EFARKNINNDTGDVADNPYHLWKIVLGKGYPKESKGC-----LFYDPQENKVFVSTNTTFLEEDHIRN-------YQTRSKLVLEEISKNTTDRPSSS--
Query: TKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACK
+++++ +T P E S V H + +PN D + Y+ D W + ++ E+ + N+ WT+ +P N + +
Subjt: TKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACK
Query: WVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEG---------------
WV+ K ++ G ++ARLVA+G+TQK IDYEETF+PVA I S R ILS+ Y+ ++ MDVKT FLNG LKE IYM P+G
Subjt: WVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEG---------------
Query: -------------FIQKGQEQKVINSTV---------------AFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLA
F Q +E + +NS+V +++LYVDD+++ D+ + + K +L +F+M DL ++ +GI I + +
Subjt: -------------FIQKGQEQKVINSTV---------------AFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLA
Query: MSQTSYIDKMLSRYKMQN
+SQ++Y+ K+LS++ M+N
Subjt: MSQTSYIDKMLSRYKMQN
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.6e-53 | 33.11 | Show/hide |
Query: GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKN------TTDRPSSSTKVVDKTRNIGQ-------------------THPSQ
GY E G +DP + KV S + F E +R S+ V I N T++ P+S+ D+ G+ HP+Q
Subjt: GYPKESKGCLFYDPQENKVFVSTNTTFLEEDHIRNYQTRSKLVLEEISKN------TTDRPSSSTKVVDKTRNIGQ-------------------THPSQ
Query: --ELGEP-RRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQ
E +P RRS R + Y S ++I +D +P + K+ ++ + +Q +K M EMES+ N + LV+ P +P+ CKWV+K K+D K+
Subjt: --ELGEP-RRSRRVVRQLDHYLGLSEAQIIIPNDGIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQ
Query: TFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVI------------------
++ARLV KG+ QK+GID++E FSPV + SIR ILS+A D E+ +DVKT FL+G+L+E IYM QPEGF G++ V
Subjt: TFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVI------------------
Query: --------------------------NSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSR
+ L+LYVDD+L++G D G +A +K L+ F MKDLG AQ ILG+ IV+ ++ L +SQ YI+++L R
Subjt: --------------------------NSTVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSR
Query: YKMQNSKNGLLPYRYGIQCAKP--PQEVED---MSNIPYASAIG
+ M+N+K P ++ +K P VE+ M+ +PY+SA+G
Subjt: YKMQNSKNGLLPYRYGIQCAKP--PQEVED---MSNIPYASAIG
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 1.0e-13 | 43.02 | Show/hide |
Query: WIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIA
W + M E++++ N W LV P N + CKWV+K K G + +ARLVAKG+ Q+EGI + ET+SPV +IR IL++A
Subjt: WIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIA
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.5e-30 | 30.38 | Show/hide |
Query: TTDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGL-SEAQIIIPND---------GIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSN
TT SSST + I HP L + + H +G ++A II PN +P T Q + D ++W M E+ + N
Subjt: TTDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSRRVVRQLDHYLGL-SEAQIIIPND---------GIEDPLTYKQTMNDVDCDQWIKVMDLEMESMYSN
Query: SVWTLV-DQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMV
W LV P++V + C+W++ +K + G + ++ARLVAKGY Q+ G+DY ETFSPV SIRI+L +A + I +DV FL G L + +YM
Subjt: SVWTLV-DQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMV
Query: QPEGFIQKGQEQKV------------------------------INS-------------TVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGN
QP GFI K + V +NS ++ ++++YVDDIL+ GND L + + L+ +F +KD
Subjt: QPEGFIQKGQEQKV------------------------------INS-------------TVAFLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGN
Query: AQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSK
Y LGI L +SQ YI +L+R M +K
Subjt: AQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSK
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.3e-29 | 31.48 | Show/hide |
Query: DPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLV-DQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIIL
+P T Q M D D+W + M E+ + N W LV P +V + C+W++ +K + G + ++ARLVAKGY Q+ G+DY ETFSPV SIRI+L
Subjt: DPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLV-DQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIIL
Query: SIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKV------------------------------INS-------------TVAFLVLYV
+A + I +DV FL G L + +YM QP GF+ K + V +NS ++ ++++YV
Subjt: SIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKV------------------------------INS-------------TVAFLVLYV
Query: DDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSK
DDIL+ GND L + L+ +F +K+ + Y LGI + L +SQ Y +L+R M +K
Subjt: DDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSK
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | 1.6e-33 | 31.58 | Show/hide |
Query: EDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIIL
++P TY + + W MD E+ +M + W + P N KPI CKWVYK K + G ++ ++ARLVAKGYTQ+EGID+ ETFSPV + S+++IL
Subjt: EDPLTYKQTMNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIIL
Query: SIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPE-------------------------------------------GFIQKGQEQ----KVINSTVAFL
+I+ Y++ + +D+ FLNG+L E IYM P GF+Q + K+ + +
Subjt: SIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPE-------------------------------------------GFIQKGQEQ----KVINSTVAFL
Query: VLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQN
++YVDDI++ N+ + ++K+ L + F+++DLG +Y LG+ I ++
Subjt: VLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQN
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| ATMG00810.1 DNA/RNA polymerases superfamily protein | 1.1e-05 | 42.11 | Show/hide |
Query: FLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSK
+L+LYVDDILL G+ L + L++ F MKDLG Y LGI I + H + L +SQT Y +++L+ M + K
Subjt: FLVLYVDDILLIGNDIGHLADIKNWLATQFQMKDLGNAQYILGIHIVQNHKNKTLAMSQTSYIDKMLSRYKMQNSK
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| ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase) | 7.3e-15 | 43.02 | Show/hide |
Query: WIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIA
W + M E++++ N W LV P N + CKWV+K K G + +ARLVAKG+ Q+EGI + ET+SPV +IR IL++A
Subjt: WIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIA
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