; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0000896 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000896
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionhigh mobility group B protein 6
Genome locationchr08:24718927..24720069
RNA-Seq ExpressionIVF0000896
SyntenyIVF0000896
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]2.23e-12399.48Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]1.51e-12197.91Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]1.91e-124100Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_022978293.1 high mobility group B protein 13-like [Cucurbita maxima]5.42e-10484.97Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL +P D+PLKSGRRPLQPKNSLPN VP+VAK+IKSKPE IQISL  DANKENHPP  A   S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDSSEFVTGF
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]8.67e-11189.34Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPP------ATTVSIESCDLSLADELNAVKRKMERLRLDGE
        MQTLHHPL +P+D+PLKSGRRPLQPKNSLPN  PSVAK IKSKPE IQISLSGDANKENHPP       TT SIESCD SLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPP------ATTVSIESCDLSLADELNAVKRKMERLRLDGE

Query:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+ FVTGF
Subjt:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

TrEMBL top hitse value%identityAlignment
A0A0A0L063 Uncharacterized protein1.5e-9397.91Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A1S3CJ78 high mobility group B protein 69.4e-96100Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A5A7SJQ2 High mobility group B protein 66.1e-9599.48Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A5D3CEI7 High mobility group B protein 69.4e-96100Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A6J1ISM0 high mobility group B protein 13-like3.3e-8084.97Show/hide
Query:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL +P D+PLKSGRRPLQPKNSLPN VP+VAK+IKSKPE IQISL  DANKENHPP  A   S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDSSEFVTGF
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01910.1 unknown protein1.2e-2145.28Show/hide
Query:  SGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N +       A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV
         + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++      F   E  D E SV
Subjt:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV

AT5G01910.2 unknown protein5.8e-2147.14Show/hide
Query:  SGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N +       A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK
         + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++
Subjt:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCTCCACCATCCCTTACCCTCTCCTCGAGATATTCCTCTCAAGTCCGGCCGCCGCCCGCTCCAGCCAAAGAATTCTCTCCCAAATCTTGTCCCTTCCGTTGC
CAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAATCATCCGCCGGCAACAACGGTGAGTATTGAGTCATGTGATTTGT
CTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAGATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGG
ATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTTGATAGGTTATTTAGACTGAAGGAACTTAGATCGTACTGTATGAGGATTTCTCCGAT
TCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATT
CTTCAGAATTCGTAACAGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
GGGAAGCCTAACTCGACCCCGACCCGATTAGGTGGCACTCTTTGTCTTTGTCTAAGTTAAAAGCAAGTAATCCAAACAAACATAACTTATTATTAAACAAAGTAGCCGTT
GGCGCCTACATACATTCAAATTCAAACCCTAAAAACACAAAATTCCAAATCCTTCACGAAAAGAAAAACTTTCTTTTCCCTTCTTCTCTTTTTCTATGATTCCATTTCTT
CACTTTCAAACCAATTTCTCCATCTCCACTCCACACCAATATGCAAACTCTCCACCATCCCTTACCCTCTCCTCGAGATATTCCTCTCAAGTCCGGCCGCCGCCCGCTCC
AGCCAAAGAATTCTCTCCCAAATCTTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAATCAT
CCGCCGGCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAGATGGAGAGATTGAGATTGGACGGTGAACGAACGGA
GAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTTGATAGGTTATTTAGAC
TGAAGGAACTTAGATCGTACTGTATGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGC
GATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAACAGGTTTTTGAAATCGTTTCTAAACTTTTGTGGATTTGCCCTAATTTTCCGATCA
TTACTACATCTTGTTCGGGTTTCAAAAGTAGAAATTAGAGAAGGAAATGGATGTAATACCTCATTATGATCTTCTTTACGCATAGATGGA
Protein sequenceShow/hide protein sequence
MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELR
MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF