; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0000908 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000908
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr04:16062452..16063162
RNA-Seq ExpressionIVF0000908
SyntenyIVF0000908
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063362.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]4.16e-14892.37Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LRGF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AMTTIPVLALPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

KAA0065995.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.51e-15094.07Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FAILRDNQLYANRKKCVFAHSQI+YLGHIISK+GVEADQDKVRSMLQWPQP+DIT LRGF GLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK AMTTIPVL LPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLSVQKWRHYL+GRRFTI+SDQKALKFL E
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLG DFEILYQP LQNKAADAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.44e-14291.53Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LRGF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AM+TIPVLALPDWSLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.44e-14291.53Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LRGF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AM+TIPVLALPDWSLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

TYK28064.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.64e-14791.95Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LRGF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AMTTIPVL LPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

TrEMBL top hitse value%identityAlignment
A0A5A7V529 Transposon Ty3-G Gag-Pol polyprotein1.2e-12192.37Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LRGF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AMTTIPVLALPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

A0A5A7VJU2 Ty3/gypsy retrotransposon protein8.6e-12394.07Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FAILRDNQLYANRKKCVFAHSQI+YLGHIISK+GVEADQDKVRSMLQWPQP+DIT LRGF GLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK AMTTIPVL LPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLSVQKWRHYL+GRRFTI+SDQKALKFL E
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLG DFEILYQP LQNKAADAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

A0A5D3BBH7 Ty3/gypsy retrotransposon protein8.0e-12191.53Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LRGF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AM+TIPVLALPDWSLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

A0A5D3DX13 Transposon Ty3-G Gag-Pol polyprotein3.6e-12191.95Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LRGF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AMTTIPVL LPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

A0A5D3E325 Ty3/gypsy retrotransposon protein8.0e-12191.53Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LRGF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATL
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE
        AFESLK+AM+TIPVLALPDWSLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHYL+GRRFTI+SDQKALKFLLE
Subjt:  AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        QREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.6e-4135.71Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL
        ++F  L    L     KC F   +  +LGH+++ +G++ + +K+ ++ ++P P     ++ F GLTGYYR+F+ ++ +IA P+TK L+KN      N   
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL

Query:  --AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFL
          AF+ LK  ++  P+L +PD++  F + TDAS   LGAVLSQ+GHP+++ S+ L+    + S  E+EL+ +V + + +RHYL+GR F I SD + L +L
Subjt:  --AFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFL

Query:  LEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
           ++   +  +W  KL  +DF+I Y    +N  ADAL
Subjt:  LEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

P20825 Retrovirus-related Pol polyprotein from transposon 2971.5e-4439.33Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA--
        ++F  L D  L     KC F   +  +LGHI++ +G++ +  KV++++ +P P     +R F GLTGYYR+F+ +Y +IA P+T  L+K   K D     
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA--

Query:  -TLAFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKF
           AFE LK  +   P+L LPD+   F++ TDAS   LGAVLSQNGHPI+F S+ L+    + S  E+EL+ +V + + +RHYL+GR+F I SD + L++
Subjt:  -TLAFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKF

Query:  LLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        L   +E   + ++W  +L  Y F+I Y    +N  ADAL
Subjt:  LLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

P92523 Uncharacterized mitochondrial protein AtMg008605.7e-3961.42Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLG--HIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA
        M+  I   +Q YANRKKC F   QI YLG  HIIS  GV AD  K+ +M+ WP+PK+ T LRGF GLTGYYRRFVK+YG+I  PLT+LL+KN+ KW E A
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLG--HIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA

Query:  TLAFESLKTAMTTIPVLALPDWSLPFM
         LAF++LK A+TT+PVLALPD  LPF+
Subjt:  TLAFESLKTAMTTIPVLALPDWSLPFM

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.3e-3532.02Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQ------------
        ++ A L    L  N +K  F  +Q+ +LG+I++ +G++AD  KVR++ + P P  +  L+ F G+T YYR+F++ Y ++A PLT L +            
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQ------------

Query:  KNAFKWDENATLAFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQN----GHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGR
        K     DE A  +F  LK+ + +  +LA P ++ PF + TDAS   +GAVLSQ+      PIA+ S+ L+   ++ +  E+E++ ++ S+   R YL G 
Subjt:  KNAFKWDENATLAFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQN----GHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGR

Query:  -RFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
            + +D + L F L  R    + ++W  ++  Y+ E++Y+P   N  ADAL
Subjt:  -RFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

Q9UR07 Transposon Tf2-11 polyprotein8.5e-3534.02Show/hide
Query:  LRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNA-FKWDENATLAFES
        L++  L  N+ KC F  SQ++++G+ IS+ G    Q+ +  +LQW QPK+   LR F G   Y R+F+    ++  PL  LL+K+  +KW    T A E+
Subjt:  LRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNA-FKWDENATLAFES

Query:  LKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNG-----HPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIG--RRFTIVSDQKAL--
        +K  + + PVL   D+S   ++ETDAS   +GAVLSQ       +P+ ++S K+S    + S+ ++E++ ++ S++ WRHYL      F I++D + L  
Subjt:  LKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNG-----HPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIG--RRFTIVSDQKAL--

Query:  KFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL
        +   E      +  +W   L  ++FEI Y+P   N  ADAL
Subjt:  KFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.0e-4061.42Show/hide
Query:  MIFAILRDNQLYANRKKCVFAHSQIRYLG--HIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA
        M+  I   +Q YANRKKC F   QI YLG  HIIS  GV AD  K+ +M+ WP+PK+ T LRGF GLTGYYRRFVK+YG+I  PLT+LL+KN+ KW E A
Subjt:  MIFAILRDNQLYANRKKCVFAHSQIRYLG--HIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA

Query:  TLAFESLKTAMTTIPVLALPDWSLPFM
         LAF++LK A+TT+PVLALPD  LPF+
Subjt:  TLAFESLKTAMTTIPVLALPDWSLPFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTTGCAATATTAAGAGATAACCAATTATATGCTAATCGAAAGAAATGCGTGTTCGCCCATTCCCAAATACGATACTTGGGCCATATTATTTCAAAAAACGGGGT
AGAAGCAGACCAGGATAAAGTTAGAAGCATGCTACAATGGCCCCAACCTAAAGATATAACAAGCTTAAGAGGATTTTCAGGCCTGACGGGTTACTATAGACGCTTTGTCA
AGAGTTATGGAGAGATTGCAGCACCCTTGACCAAACTGCTGCAGAAGAATGCTTTCAAATGGGATGAGAACGCCACACTTGCATTTGAAAGTCTAAAAACAGCTATGACT
ACAATACCCGTGCTAGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAGACTGATGCCTCTGGCAGTGGATTAGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGC
ATTCTTCAGCCAGAAGTTGTCGCCAAGGGCCCAATCCAAATCCATCTATGAAAGAGAATTGATGGTTGTAGTACTATCAGTACAGAAGTGGCGGCATTATCTCATAGGAA
GAAGGTTTACCATTGTATCGGACCAAAAAGCTCTAAAGTTCCTATTGGAGCAGAGGGAGGTTCAACCACAATTCCAAAAATGGTTAACCAAGCTGTTGGGATATGACTTT
GAGATTCTATATCAACCAAGACTCCAAAATAAAGCAGCTGATGCACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTTGCAATATTAAGAGATAACCAATTATATGCTAATCGAAAGAAATGCGTGTTCGCCCATTCCCAAATACGATACTTGGGCCATATTATTTCAAAAAACGGGGT
AGAAGCAGACCAGGATAAAGTTAGAAGCATGCTACAATGGCCCCAACCTAAAGATATAACAAGCTTAAGAGGATTTTCAGGCCTGACGGGTTACTATAGACGCTTTGTCA
AGAGTTATGGAGAGATTGCAGCACCCTTGACCAAACTGCTGCAGAAGAATGCTTTCAAATGGGATGAGAACGCCACACTTGCATTTGAAAGTCTAAAAACAGCTATGACT
ACAATACCCGTGCTAGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAGACTGATGCCTCTGGCAGTGGATTAGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGC
ATTCTTCAGCCAGAAGTTGTCGCCAAGGGCCCAATCCAAATCCATCTATGAAAGAGAATTGATGGTTGTAGTACTATCAGTACAGAAGTGGCGGCATTATCTCATAGGAA
GAAGGTTTACCATTGTATCGGACCAAAAAGCTCTAAAGTTCCTATTGGAGCAGAGGGAGGTTCAACCACAATTCCAAAAATGGTTAACCAAGCTGTTGGGATATGACTTT
GAGATTCTATATCAACCAAGACTCCAAAATAAAGCAGCTGATGCACTTTGA
Protein sequenceShow/hide protein sequence
MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMT
TIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDF
EILYQPRLQNKAADAL