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IVF0000938 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000938
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr05:13485978..13486274
RNA-Seq ExpressionIVF0000938
SyntenyIVF0000938
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]5.34e-2557.47Show/hide
Query:  VQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQS
        VQ +M ++E +KRF+ELAKYAL F+ DE DKCK FEEG++T++RA VT NM+WSN  K+V+ AMRVE+ ++++K+NK+L K  CG S
Subjt:  VQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQS

KAA0062038.1 hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa]2.41e-3264.89Show/hide
Query:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSM
        M+LV+  + V   +K+F ELAKYALAF++DE DKCK FEEGLQT++ A VTT+M+  +F KLVEAAMRVERC+  +K+NKI KKDPCGQSF SM
Subjt:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSM

KAA0062762.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]5.63e-3260.44Show/hide
Query:  MIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE
        M V E +K F ELAKYALAF+++EADKCK FEEGL+T++RA +T +M+WS+F KLVE  M VE+C++E+K+N   KKDPC QSFSS++  E
Subjt:  MIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE

TYK04983.1 uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]1.11e-3164.89Show/hide
Query:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSM
        M+LV+  + V   +K+F ELAKYALAF++DE DKCK FEEGLQT++ A VTT+M+  +F KLVEAAMRVERC+  +K+NKI KKDPCGQSF SM
Subjt:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSM

TYK21986.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]1.16e-2061.43Show/hide
Query:  IDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE
        +DE DKCK F++GLQT++RA V   MN S+F KLVE A+RVERC+ +EK+NKI+K+ PCGQS S M+G E
Subjt:  IDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE

TrEMBL top hitse value%identityAlignment
A0A5A7V373 Uncharacterized protein1.3e-2464.21Show/hide
Query:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQ
        M+LV+  + V   +K+F ELAKYALAF++DE DKCK FEEGLQT++ A VTT+M+  +F KLVEAAMRVERC+  +K+NKI KKDPCGQSF SM+
Subjt:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQ

A0A5A7V3F2 Zf-CCHC domain-containing protein8.4e-2460.44Show/hide
Query:  MIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE
        M V E +K F ELAKYALAF+++EADKCK FEEGL+T++RA +T +M+WS+F KLVE  M VE+C++E+K+N   KKDPC QSFSS++  E
Subjt:  MIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE

A0A5D3BZ05 Retrotrans_gag domain-containing protein1.3e-2464.21Show/hide
Query:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQ
        M+LV+  + V   +K+F ELAKYALAF++DE DKCK FEEGLQT++ A VTT+M+  +F KLVEAAMRVERC+  +K+NKI KKDPCGQSF SM+
Subjt:  MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQ

A0A5D3D2P1 Putative Retrotransposon protein1.5e-2057.47Show/hide
Query:  VQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQS
        VQ +M ++E +KRF+ELAKYAL F+ DE DKCK FEEG++T++RA VT NM+WSN  K+V+ AMRVE+ ++++K+NK+L K  CG S
Subjt:  VQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQS

A0A5D3DEF9 RNA-directed DNA polymerase-like protein2.5e-1561.43Show/hide
Query:  IDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE
        +DE DKCK F++GLQT++RA V   MN S+F KLVE A+RVERC+ +EK+NKI+K+ PCGQS S M+G E
Subjt:  IDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTGGTTCAAGACAACATGATCGTCGTAGAATGTAAGAAAAGATTTATGGAACTGGCTAAATACGCTTTAGCCTTTTTAATTGATGAAGCTGATAAATGCAAGTG
GTTTGAAGAAGGCTTACAAACTAAGATGAGAGCACATGTGACGACCAACATGAATTGGTCAAATTTTCCTAAATTGGTAGAAGCTGCCATGAGAGTCGAGAGATGCTTGA
TAGAGGAGAAGCAAAACAAAATTTTGAAGAAAGACCCGTGCGGTCAAAGTTTTAGTAGCATGCAGGGTGATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTGGTTCAAGACAACATGATCGTCGTAGAATGTAAGAAAAGATTTATGGAACTGGCTAAATACGCTTTAGCCTTTTTAATTGATGAAGCTGATAAATGCAAGTG
GTTTGAAGAAGGCTTACAAACTAAGATGAGAGCACATGTGACGACCAACATGAATTGGTCAAATTTTCCTAAATTGGTAGAAGCTGCCATGAGAGTCGAGAGATGCTTGA
TAGAGGAGAAGCAAAACAAAATTTTGAAGAAAGACCCGTGCGGTCAAAGTTTTAGTAGCATGCAGGGTGATGAATGA
Protein sequenceShow/hide protein sequence
MSLVQDNMIVVECKKRFMELAKYALAFLIDEADKCKWFEEGLQTKMRAHVTTNMNWSNFPKLVEAAMRVERCLIEEKQNKILKKDPCGQSFSSMQGDE