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IVF0000939 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000939
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:16715427..16715594
RNA-Seq ExpressionIVF0000939
SyntenyIVF0000939
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058871.1 retrotransposon protein [Cucumis melo var. makuwa]4.57e-3096.36Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCEDVDDED+GDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]4.57e-3094.55Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYC+D+DDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
TYK04228.1 retrotransposon protein [Cucumis melo var. makuwa]5.13e-2990.91Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYC++VDD+D+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
TYK05336.1 retrotransposon protein [Cucumis melo var. makuwa]9.21e-3094.55Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCEDVDDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFT+WQLRN+
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
TYK11987.1 retrotransposon protein [Cucumis melo var. makuwa]3.75e-2994.55Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYC DVDDED+GDSTYATTTASEDIQYIETTNEWSQWR+DLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
TrEMBL top hitse value%identityAlignment
A0A5A7SZH3 Retrotransposon protein6.8e-23100Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7U4G2 Retrotransposon protein7.5e-2296.36Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCEDVDDED+GDSTYATTTASEDIQYIETTNEWSQW DDLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7UID8 Retrotransposon protein7.5e-2296.36Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCEDVDDED+G+STYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7UZF0 Retrotransposon protein5.8e-2296.36Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCEDVDDED+GDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7V4Q8 Retrotransposon protein5.8e-2294.55Show/hide
Query:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
        MTYC+D+DDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGAGGACGTTGACGACGAGGACGACGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGAAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGAGGACGTTGACGACGAGGACGACGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGAAACGCTTAG
Protein sequenceShow/hide protein sequence
MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA