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IVF0000943 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000943
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationchr12:23623172..23623991
RNA-Seq ExpressionIVF0000943
SyntenyIVF0000943
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB87866.1 RING-H2 finger protein ATL80 [Morus notabilis]8.42e-4462.9Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEKIPCYEYN--NKMEDFQMECVICLENFKLGERCRLLPNCNH
        MEIV+S +LL VGIAVLVVIH+CIVGRA    G   ++NNNNN+N  G  KR S+EDL+ IPC++YN   + E   ++C +CLENFK G++CRLLP+CNH
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEKIPCYEYN--NKMEDFQMECVICLENFKLGERCRLLPNCNH

Query:  SFHVQCIDSWLLNKPICPICRTFA
        SFH QCIDSWLL  P+CPICRT A
Subjt:  SFHVQCIDSWLLNKPICPICRTFA

XP_004152551.1 uncharacterized protein LOC101222125 [Cucumis sativus]4.37e-5374.44Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFH
        MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNN NSYGMKRFSNEDLEKIPCYEY+NK+EDF+ME                         
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFH

Query:  VQCIDSWLLNKPICPICRTFAAVLPKISLIQLN
             SWLLNKPICPICRTFAAVLPKISLIQLN
Subjt:  VQCIDSWLLNKPICPICRTFAAVLPKISLIQLN

XP_010101192.2 RING-H2 finger protein ATL80 [Morus notabilis]1.56e-4463.49Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEKIPCYEYN--NKMEDFQMECVICLENFKLGERCRLLPNC
        MVMEIV+S +LL VGIAVLVVIH+CIVGRA    G   ++NNNNN+N  G  KR S+EDL+ IPC++YN   + E   ++C +CLENFK G++CRLLP+C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEKIPCYEYN--NKMEDFQMECVICLENFKLGERCRLLPNC

Query:  NHSFHVQCIDSWLLNKPICPICRTFA
        NHSFH QCIDSWLL  P+CPICRT A
Subjt:  NHSFHVQCIDSWLLNKPICPICRTFA

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]3.92e-4965.94Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+           K  SN+DLEK+PCYEY +          +ECV+CLE FK GERCRLL
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL

Query:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI
        PNC HSFHV+CIDSWLL  PICPICRT  AV+PK  L+
Subjt:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]1.94e-4966.67Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+           K  SN+DLEK+PCYEY +          +ECV+CLE FK GERCRLL
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL

Query:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI
        PNC HSFHV+CIDSWLL  PICPICRT AAV PK  L+
Subjt:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI

TrEMBL top hitse value%identityAlignment
A0A059A647 RING-type domain-containing protein1.2e-3162.6Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEY--NNKMEDFQMECVICLENFKLGERCRLLPNCN
        MVMEI++S VLL +GIAVLVVIHVCIVGRA RE G +       NSNS   K  S+EDL+K+PC+EY   +K  D   +C +CLENFK GE+CRLLPNC 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEY--NNKMEDFQMECVICLENFKLGERCRLLPNCN

Query:  HSFHVQCIDSWLLNKPICPICRT
        H FH QCIDSWLL   ICP+CRT
Subjt:  HSFHVQCIDSWLLNKPICPICRT

A0A5N6RPJ5 RING-type domain-containing protein1.3e-3056.49Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYN-NKMEDFQMECVICLENFKLGERCRLLPNCNHSF
        ME+VVS VLL VGI VLV+IH+CI GRA R        NN     S G KR S  DLE++PC++Y   +     ++C +CL+NFK+G++CRLLPNC HSF
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYN-NKMEDFQMECVICLENFKLGERCRLLPNCNHSF

Query:  HVQCIDSWLLNKPICPICRTFAAVLPKISLI
        HVQCIDSWLL  PICPICRT     PKI +I
Subjt:  HVQCIDSWLLNKPICPICRTFAAVLPKISLI

A0A6J1GQW8 RING-H2 finger protein ATL56-like3.1e-3765.94Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N          SN+DLEK+PCYEY +          +ECV+CLE FK GERCRLL
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL

Query:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI
        PNC HSFHV+CIDSWLL  PICPICRT  AV+PK  L+
Subjt:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI

A0A6J1JUU5 RING-H2 finger protein ATL56-like1.8e-3766.67Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N          SN+DLEK+PCYEY +          +ECV+CLE FK GERCRLL
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNN----KMEDFQMECVICLENFKLGERCRLL

Query:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI
        PNC HSFHV+CIDSWLL  PICPICRT AAV PK  L+
Subjt:  PNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLI

W9RES1 RING-H2 finger protein ATL802.8e-3362.9Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEKIPCYEYN--NKMEDFQMECVICLENFKLGERCRLLPNCNH
        MEIV+S +LL VGIAVLVVIH+CIVGRA    G   ++NNNNN+N  G  KR S+EDL+ IPC++YN   + E   ++C +CLENFK G++CRLLP+CNH
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEKIPCYEYN--NKMEDFQMECVICLENFKLGERCRLLPNCNH

Query:  SFHVQCIDSWLLNKPICPICRTFA
        SFH QCIDSWLL  P+CPICRT A
Subjt:  SFHVQCIDSWLLNKPICPICRTFA

SwissProt top hitse value%identityAlignment
Q8L9W3 E3 ubiquitin-protein ligase ATL232.4e-1052.27Show/hide
Query:  ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR
        EC +CLE+ + G+  RL+P CNH FH  C D+WL N  +CP+CR
Subjt:  ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR

Q8LBA0 NEP1-interacting protein-like 21.2e-1246.27Show/hide
Query:  SNEDLEKIPCYEYNNKMEDFQM-ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR
        S + L K+PCY  +++M   Q+  C ICL++ K GE  R LP C+H+FH+ C+D WL+    CPICR
Subjt:  SNEDLEKIPCYEYNNKMEDFQM-ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR

Q9FLC6 RING-H2 finger protein ATL736.4e-1134.78Show/hide
Query:  LVVGIAVLVVIHVCIVG------RALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFHVQC
        +V+ +A L+   +C +G        LR    +  + +  ++N+   K      L+ IP   Y+ +++    EC+ICL +F  GE  R+LP CNH FHV+C
Subjt:  LVVGIAVLVVIHVCIVG------RALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFHVQC

Query:  IDSWLLNKPICPICR
        ID+WLL+   CP CR
Subjt:  IDSWLLNKPICPICR

Q9LUL6 Putative RING-H2 finger protein ATL611.1e-1032.52Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKR---FSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNC
        +++ + ++ V       +  V+  CI+      +     DNNN+   S  +K         L  IP  ++N K   + +ECV+CL     G++ R+LP+C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKR---FSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNC

Query:  NHSFHVQCIDSWLLNKPICPICR
        +H FHV+CIDSWL +   CPICR
Subjt:  NHSFHVQCIDSWLLNKPICPICR

Q9SRQ8 RING-H2 finger protein ATL511.4e-1335.78Show/hide
Query:  WRSDNNNNNSNSY---------GMKRFSNEDLEKIPCYEYNNKMEDF--QMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTFAAV
        W+  NNNNN+ +          G        ++ I  Y+Y  KM+ F    +C +CL  F+  E  RLLP CNH+FHV CID+WL +   CP+CR F   
Subjt:  WRSDNNNNNSNSY---------GMKRFSNEDLEKIPCYEYNNKMEDF--QMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTFAAV

Query:  LPKISLIQL
           + ++ L
Subjt:  LPKISLIQL

Arabidopsis top hitse value%identityAlignment
AT1G74410.1 RING/U-box superfamily protein8.2e-1446.27Show/hide
Query:  SNEDLEKIPCYEYNNKMEDFQM-ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR
        S + L K+PCY  +++M   Q+  C ICL++ K GE  R LP C+H+FH+ C+D WL+    CPICR
Subjt:  SNEDLEKIPCYEYNNKMEDFQM-ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR

AT3G03550.1 RING/U-box superfamily protein9.7e-1535.78Show/hide
Query:  WRSDNNNNNSNSY---------GMKRFSNEDLEKIPCYEYNNKMEDF--QMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTFAAV
        W+  NNNNN+ +          G        ++ I  Y+Y  KM+ F    +C +CL  F+  E  RLLP CNH+FHV CID+WL +   CP+CR F   
Subjt:  WRSDNNNNNSNSY---------GMKRFSNEDLEKIPCYEYNNKMEDF--QMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTFAAV

Query:  LPKISLIQL
           + ++ L
Subjt:  LPKISLIQL

AT3G14320.1 Zinc finger, C3HC4 type (RING finger) family protein7.7e-1232.52Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKR---FSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNC
        +++ + ++ V       +  V+  CI+      +     DNNN+   S  +K         L  IP  ++N K   + +ECV+CL     G++ R+LP+C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKR---FSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNC

Query:  NHSFHVQCIDSWLLNKPICPICR
        +H FHV+CIDSWL +   CPICR
Subjt:  NHSFHVQCIDSWLLNKPICPICR

AT5G05280.1 RING/U-box superfamily protein4.5e-1234.78Show/hide
Query:  LVVGIAVLVVIHVCIVG------RALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFHVQC
        +V+ +A L+   +C +G        LR    +  + +  ++N+   K      L+ IP   Y+ +++    EC+ICL +F  GE  R+LP CNH FHV+C
Subjt:  LVVGIAVLVVIHVCIVG------RALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFHVQC

Query:  IDSWLLNKPICPICR
        ID+WLL+   CP CR
Subjt:  IDSWLLNKPICPICR

AT5G42200.1 RING/U-box superfamily protein1.7e-1152.27Show/hide
Query:  ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR
        EC +CLE+ + G+  RL+P CNH FH  C D+WL N  +CP+CR
Subjt:  ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATAGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTG
GAGAAGTGATAATAATAATAATAATAGTAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAACAACAAAATGGAGGATT
TTCAAATGGAATGTGTGATTTGTTTGGAGAATTTCAAATTGGGGGAAAGATGCAGATTGCTGCCTAATTGTAATCATAGTTTTCATGTTCAATGTATAGATTCTTGGCTT
TTGAATAAACCCATTTGCCCAATTTGTAGGACTTTTGCTGCTGTTCTTCCTAAAATTTCATTGATTCAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
GCCAGAAGGACACTCATCACCAAATTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTCTCTCTGTCTCTCTGTCTCTGTGTGTCTTTAAAACTCAATCCCAACAAAACTCTT
CCTTTTGAAGATCCAAAATGAGTGAATCTACAAAATAGAACCAAAAACAAAACAAAAGGGGTTTGTCATTTTGTGGAGATTATTATGGTTATGGAGATTGTTGTATCAGC
TGTTCTGTTAGTGGTTGGAATAGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAAGTGATAATAATAATAATAATA
GTAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAACAACAAAATGGAGGATTTTCAAATGGAATGTGTGATTTGTTTG
GAGAATTTCAAATTGGGGGAAAGATGCAGATTGCTGCCTAATTGTAATCATAGTTTTCATGTTCAATGTATAGATTCTTGGCTTTTGAATAAACCCATTTGCCCAATTTG
TAGGACTTTTGCTGCTGTTCTTCCTAAAATTTCATTGATTCAATTGAATTGAACTGGTTCATGGTTCTGATTTTGCTGCCACTTGTGGTAGCCGGGCCGGAGGAAGTCGA
CGTTCACGAGAAGCCCCAACGTCTACGGTGACAAAGTTGCAGAGCATGGCAAAGAGAAGAAGAAGATGAAGAACTCTTTTTGTGGATGATATTGTTCTTGTTTGTAACTT
CTTTTTGTTGTTTTGTATTATTCAGTTTCGTAATGAATAAGAATGTGGAC
Protein sequenceShow/hide protein sequence
MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWL
LNKPICPICRTFAAVLPKISLIQLN