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IVF0000947 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000947
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr04:6884045..6884314
RNA-Seq ExpressionIVF0000947
SyntenyIVF0000947
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033401.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.94e-1161.11Show/hide
Query:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS
        DILLFV+D DE I NLQF+IHLFE  +GLNIN  K +I+ +N+ KER + VA S
Subjt:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS

KAA0045522.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.23e-1460.87Show/hide
Query:  MDCLSRILQHLEHD--ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS
        MD L+RIL  LE    IL+FVEDNDEYI NL+F+IHL E  S LNIN  K +ISPIN+   +VDLVA +
Subjt:  MDCLSRILQHLEHD--ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS

KAA0048634.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.19e-1167.35Show/hide
Query:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVD
        DILLFV+D+DE I NLQF+IHLFE  SGLNIN  K +IS I ++KER D
Subjt:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVD

TYJ97747.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.37e-1269.23Show/hide
Query:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA
        DILLFV+DN E I NLQF+IHLFE  S LNIN +K +ISPIN++KER D VA
Subjt:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA

TYK07347.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.02e-1064.15Show/hide
Query:  ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS
        ILLFV+D DE I NLQFSIHLFE  +GLNIN  K  I+P+N+SK R + VA S
Subjt:  ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS

TrEMBL top hitse value%identityAlignment
A0A5A7SVC7 LINE-1 retrotransposable element ORF2 protein2.3e-0947.73Show/hide
Query:  MDCLSRILQHLEH---------------------DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS
        MD LSR+L+HLE+                     DILLFV+D DE I NLQF+IHLFE  +GLNIN  K +I+ +N+ KER + VA S
Subjt:  MDCLSRILQHLEH---------------------DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS

A0A5A7SXB2 LINE-1 retrotransposable element ORF2 protein1.5e-0844.83Show/hide
Query:  MDCLSRILQHLE----------------------HDILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA
        MD LSR+L HLE                       D+L+FVEDN++Y+ NLQ ++ LFE  SGL  N  K TISPINIS +R D +A
Subjt:  MDCLSRILQHLE----------------------HDILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA

A0A5A7TQ88 LINE-1 retrotransposable element ORF2 protein1.6e-1060.87Show/hide
Query:  MDCLSRILQHLEHD--ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS
        MD L+RIL  LE    IL+FVEDNDEYI NL+F+IHL E  S LNIN  K +ISPIN+   +VDLVA +
Subjt:  MDCLSRILQHLEHD--ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS

A0A5D3BF46 LINE-1 retrotransposable element ORF2 protein4.0e-0969.23Show/hide
Query:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA
        DILLFV+DN E I NLQF+IHLFE  S LNIN +K +ISPIN++KER D VA
Subjt:  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA

A0A5D3E3T6 LINE-1 retrotransposable element ORF2 protein1.2e-0848.86Show/hide
Query:  MDCLSRILQHLE---------------------HDILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS
        MD LS IL+HLE                     +DILLFVED+D  I NLQ +IHLFE  SGLNI+  K +ISP+NI KE ++ VA+S
Subjt:  MDCLSRILQHLE---------------------HDILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGTCTTAGCAGAATACTACAACACCTAGAGCATGACATCTTGCTTTTCGTTGAGGACAATGATGAATATATCATAAATCTCCAATTTTCTATTCATCTCTTTGA
ATTTGTTTCTGGTTTGAACATCAATCGGGTTAAACCTACCATCTCCCCAATTAATATCAGCAAAGAGAGAGTTGATTTGGTAGCCGATAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGTCTTAGCAGAATACTACAACACCTAGAGCATGACATCTTGCTTTTCGTTGAGGACAATGATGAATATATCATAAATCTCCAATTTTCTATTCATCTCTTTGA
ATTTGTTTCTGGTTTGAACATCAATCGGGTTAAACCTACCATCTCCCCAATTAATATCAGCAAAGAGAGAGTTGATTTGGTAGCCGATAGTTGA
Protein sequenceShow/hide protein sequence
MDCLSRILQHLEHDILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS