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IVF0000974 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000974
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:3443659..3443826
RNA-Seq ExpressionIVF0000974
SyntenyIVF0000974
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036983.1 retrotransposon protein [Cucumis melo var. makuwa]2.24e-32100Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]5.60e-2481.82Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MT CDDIDDVDEGDSAY TTTA EDI YIET N+WSQWR ELAE+MF  WQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]1.88e-2278.18Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MT CDDIDD DEGDS Y TTTA EDIQYIET N+WSQWR +LAE+MF +WQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
TYJ97711.1 retrotransposon protein [Cucumis melo var. makuwa]2.68e-2276.36Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MTNCDDID+V+E DSAY TTTA EDIQYI+T  +WS WR ELAEAMF +WQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
TYK11987.1 retrotransposon protein [Cucumis melo var. makuwa]1.08e-2174.55Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MT C+D+DD DEGDS Y TTTA EDIQYIET N+WSQWR +LAE+MF +WQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
TrEMBL top hitse value%identityAlignment
A0A5A7SNH9 Putative nuclease HARBI18.1e-1678.18Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MT CDD+ DVDEGDSAY TTTA EDI YIETKN+WSQWR ELAE+MF  W+LRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
A0A5A7V4Q8 Retrotransposon protein4.7e-1678.18Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MT CDDIDD DEGDS Y TTTA EDIQYIET N+WSQWR +LAE+MF +WQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
A0A5D3BDZ0 Retrotransposon protein9.5e-1781.82Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MT CDDIDDVDEGDSAY TTTA EDI YIET N+WSQWR ELAE+MF  WQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
A0A5D3D656 Putative nuclease HARBI18.1e-1678.18Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MT CDD+ DVDEGDSAY TTTA EDI YIETKN+WSQWR ELAE+MF  W+LRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
A0A5D3DCC0 Retrotransposon protein4.0e-23100Show/hide
Query:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
        MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
Subjt:  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATTGCGACGATATTGACGACGTGGACGAGGGAGACTCCGCGTATACCACGACCACCGCTGTAGAAGACATTCAGTACATTGAGACAAAAAACAAATGGTCTCA
GTGGCGCGGCGAATTAGCTGAAGCGATGTTCATAAAATGGCAGTTGCGTAACGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAATTGCGACGATATTGACGACGTGGACGAGGGAGACTCCGCGTATACCACGACCACCGCTGTAGAAGACATTCAGTACATTGAGACAAAAAACAAATGGTCTCA
GTGGCGCGGCGAATTAGCTGAAGCGATGTTCATAAAATGGCAGTTGCGTAACGCTTAA
Protein sequenceShow/hide protein sequence
MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA