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IVF0000987 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000987
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSplicing factor YJU2
Genome locationchr10:24582734..24583142
RNA-Seq ExpressionIVF0000987
SyntenyIVF0000987
Gene Ontology termsGO:0000349 - generation of catalytic spliceosome for first transesterification step (biological process)
GO:0071006 - U2-type catalytic step 1 spliceosome (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007590 - Saf4/Yju2 protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI14833.3 unnamed protein product, partial [Vitis vinifera]1.98e-3995.52Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPR+RRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

KAF9839281.1 hypothetical protein H0E87_007259 [Populus deltoides]1.13e-3987.01Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSSVPDVLLSL
        MGERKVLNKYYPPDFDPSKLPR+RRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG +  VP  +L+L
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSSVPDVLLSL

KAF9840338.1 hypothetical protein H0E87_008065 [Populus deltoides]7.02e-4095.52Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPR+RRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

XP_008466970.1 PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis melo]4.59e-4198.51Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

XP_016903347.1 PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis melo]9.27e-4097.01Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

TrEMBL top hitse value%identityAlignment
A0A0B0MV50 Splicing factor YJU28.4e-3198.51Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

A0A5D2RD26 Splicing factor YJU28.4e-3198.51Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

A0A6J1AVA5 Splicing factor YJU28.4e-3198.51Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

A0A6P9EB24 Splicing factor YJU28.4e-3198.51Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

A0A6P9ED46 Splicing factor YJU28.4e-3198.51Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

SwissProt top hitse value%identityAlignment
A8WHR3 Splicing factor YJU27.6e-2168.25Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RKE V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV

Q54WR5 Splicing factor YJU23.5e-1865.08Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV
        MGERKV++KYYPPDFDPSK+ +++  +    KV  MLPMSIRCNTCG YI +GTKFN++KE V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV

Q9BW85 Splicing factor YJU25.8e-2159.49Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSSVPDVLLSLPL
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RKE V        +V L LP+
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSSVPDVLLSLPL

Q9D6J3 Splicing factor YJU27.6e-2168.25Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RKE V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV

Q9P7C5 Splicing factor YJU24.8e-1559.09Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKE
        M ERKVLNKY PPD+DPS  P  ++ K Q     ++ VR+M P S+RC+TCG YIYKG KFN+RKE
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKE

Arabidopsis top hitse value%identityAlignment
AT1G17130.1 Family of unknown function (DUF572)1.3e-3189.55Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGNYIYKGTKFNSRKEDVIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

AT1G17130.2 Family of unknown function (DUF572)2.9e-3186.96Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSS
        MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGNYIYKGTKFNSRKEDVIG   S
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSS

AT2G29430.1 Family of unknown function (DUF572)7.1e-0660.61Show/hide
Query:  MMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        + LPM ++CN C N + KGTKF SR EDVIG T
Subjt:  MMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

AT2G32050.1 Family of unknown function (DUF572)1.5e-2468.66Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERK LNKYYPP+FDP ++PR+R+PKNQQ K+R M+P+ IRCNTCGNY+ +GTK N R+E+VIG T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST

AT3G43250.1 Family of unknown function (DUF572)8.9e-2570.15Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST
        MGERK LNKYYPPDFDP K+ R+++PKNQQ K+R MLP+ +RCNTCGNY+ +GTKFN R+EDVI  T
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCT
TCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGGTTCTACTTCAAGTGTACCAGATGTTC
TGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTACGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCT
TCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGGTTCTACTTCAAGTGTACCAGATGTTC
TGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTACGTTGTAG
Protein sequenceShow/hide protein sequence
MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSSVPDVLLSLPLKQTPKTQTTL