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IVF0000990 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0000990
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:13725265..13725570
RNA-Seq ExpressionIVF0000990
SyntenyIVF0000990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]2.55e-4081.11Show/hide
Query:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        +FG+QSRAEEDFLRQ  QTTRK N  ME+YLL MK NVDNLGQ GSPVP RAL+S VLLGLDEVYN VIVVIQGKPDISWLDMQS+LL F
Subjt:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

KGN65684.1 hypothetical protein Csa_019689 [Cucumis sativus]3.49e-4381.11Show/hide
Query:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        +FG++SRAEEDFLRQTFQTTRK N NMEDYL  MK N DNLGQA SP+P RAL+S VLLGLDEVYNPVIVVIQGKP+ISWLDMQS+LL F
Subjt:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

XP_031739914.1 uncharacterized protein LOC116403326 isoform X1 [Cucumis sativus]6.67e-4080.9Show/hide
Query:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        FG+QSRAEEDFLRQTFQTTRK +  MEDYL  MK NVDNL QAGS VPP AL+S VLLGLDEVYN VIVVIQGK +ISWLDMQSELL F
Subjt:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

XP_031739915.1 uncharacterized protein LOC116403326 isoform X2 [Cucumis sativus]5.62e-4080.9Show/hide
Query:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        FG+QSRAEEDFLRQTFQTTRK +  MEDYL  MK NVDNL QAGS VPP AL+S VLLGLDEVYN VIVVIQGK +ISWLDMQSELL F
Subjt:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

XP_038904321.1 uncharacterized protein LOC120090675 [Benincasa hispida]1.95e-3875.28Show/hide
Query:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        FGIQSRAEED+LR  FQTTRK NL MEDYL TMK NVDNL QAGSPVPPRALV  VLLGLDE YN ++  IQG+ D+SWLDMQS+LL +
Subjt:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein6.0e-3381.11Show/hide
Query:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        +FG++SRAEEDFLRQTFQTTRK N NMEDYL  MK N DNLGQA SP+P RAL+S VLLGLDEVYNPVIVVIQGKP+ISWLDMQS+LL F
Subjt:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

A0A5A7SIT7 Uncharacterized protein3.9e-3281.11Show/hide
Query:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        +FG+QSRAEEDFLRQ  QTTRK N  ME+YLL MK NVDNLGQ GSPVP RAL+S VLLGLDEVYN VIVVIQGKPDISWLDMQS+LL F
Subjt:  YFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-3076.4Show/hide
Query:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        FG+QSRAEEDFLRQ FQTTRK   + EDYL  MK N D LGQAGSPVP RA +S  LLGLDEVYNPVI VIQGKP+ISW+DMQSELL F
Subjt:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

A0A5D3E3L7 Uncharacterized protein6.2e-3079.78Show/hide
Query:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF
        FGI+SRAEE FLR TFQTTR+ N  MEDYL  MK N DNLGQAGSPVP R L+S VLLGLDEVYNPV  VIQGKPDISWLDMQSELL F
Subjt:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF

A0A6J1D5J0 uncharacterized protein LOC1110175013.9e-2467.06Show/hide
Query:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSE
        FG+QS+AEED+LRQ FQ TRK +L M D+L  MK++ DNLGQAGSPVP R+L+S VLLGLDE YNPV+  IQGK  ISW +MQ+E
Subjt:  FGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)7.6e-0436.11Show/hide
Query:  QTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGK-PDISWLDMQSELL
        +TT   +L++ +Y   +K+  D L    SP+  R LV H+L GL E Y+ ++ VI+ K P  S+ + +S LL
Subjt:  QTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGK-PDISWLDMQSELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGGACCTATGAGAAGCCATTCAAAATCTATTTTGGAATACAATCAAGAGCTGAGGAAGATTTTCTTCGCCAAACATTCCAAACAACAAGGAAATGTAATCTTAA
CATGGAAGACTATTTACTAACTATGAAAAATAATGTTGATAACCTTGGGCAAGCTGGCAGTCCAGTACCTCCGCGTGCTCTTGTTTCACATGTGTTGTTGGGGTTAGATG
AGGTTTACAACCCAGTCATTGTTGTAATCCAAGGTAAACCAGACATATCATGGTTGGATATGCAATCCGAACTTCTTAATTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGGACCTATGAGAAGCCATTCAAAATCTATTTTGGAATACAATCAAGAGCTGAGGAAGATTTTCTTCGCCAAACATTCCAAACAACAAGGAAATGTAATCTTAA
CATGGAAGACTATTTACTAACTATGAAAAATAATGTTGATAACCTTGGGCAAGCTGGCAGTCCAGTACCTCCGCGTGCTCTTGTTTCACATGTGTTGTTGGGGTTAGATG
AGGTTTACAACCCAGTCATTGTTGTAATCCAAGGTAAACCAGACATATCATGGTTGGATATGCAATCCGAACTTCTTAATTTTTGA
Protein sequenceShow/hide protein sequence
MLRTYEKPFKIYFGIQSRAEEDFLRQTFQTTRKCNLNMEDYLLTMKNNVDNLGQAGSPVPPRALVSHVLLGLDEVYNPVIVVIQGKPDISWLDMQSELLNF