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IVF0001110 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001110
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol protein
Genome locationchr11:11402559..11402846
RNA-Seq ExpressionIVF0001110
SyntenyIVF0001110
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031845.1 pol protein [Cucumis melo var. makuwa]2.06e-5298.88Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKL+PRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

KAA0034871.1 pol protein [Cucumis melo var. makuwa]2.06e-5298.88Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

KAA0051723.1 pol protein [Cucumis melo var. makuwa]5.33e-5398.88Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL LP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

KAA0065719.1 pol protein [Cucumis melo var. makuwa]5.89e-5298.88Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTN AIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

KAA0067780.1 pol protein [Cucumis melo var. makuwa]5.89e-5298.88Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFER GKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

TrEMBL top hitse value%identityAlignment
A0A5A7T0S7 Reverse transcriptase7.4e-41100Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

A0A5A7TWK5 Ty3-gypsy retrotransposon protein7.4e-41100Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

A0A5A7TZI9 Pol protein7.4e-41100Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

A0A5A7ULI8 Pol protein7.4e-41100Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

A0A5A7V8X5 Pol protein7.4e-41100Show/hide
Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.2e-0534.52Show/hide
Query:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

P0CT35 Transposon Tf2-2 polyprotein2.2e-0534.52Show/hide
Query:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

P0CT36 Transposon Tf2-3 polyprotein2.2e-0534.52Show/hide
Query:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

P0CT41 Transposon Tf2-12 polyprotein2.2e-0534.52Show/hide
Query:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

Q9UR07 Transposon Tf2-11 polyprotein2.2e-0534.52Show/hide
Query:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
        Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  QSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGA
CCTTGAGTTTGAGGTAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTGCGTTTCGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTG
AGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCATCACTCTCGACAGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGA
CCTTGAGTTTGAGGTAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTGCGTTTCGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTG
AGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCATCACTCTCGACAGTCATGA
Protein sequenceShow/hide protein sequence
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPHHSRQS